Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00012 ATGGAAGGGTTGGCGGTTCCATTCCCACACCTTTTGCCATTGCCGCCATTTCCAAAacttgctgctgctgctgctgctatTTCCACTTCTACTTCCACTGgaggaggaggaggattTATCTCTCTCAAACAACAACTACAACTGCGTCCACGTCGTCGTTCTCCCTATTgtacatcatcatcatcatcatcatcatcgcaCTCGCAGCCTGAGGGAGAACGTGTGAGTGGAGATTCCATACGCGAAagatttcttaatttttatgcTTCCCGTGGTCACAAGGTCCTTCCCAGTGCTTCTCTCGTCCCAGATGACCCCACCGTTCTTCTCACTATCGCTGGGATGCTTCAGTTCAAGCCTATCTTCCTTGGAAATGTTCCCAGACAAGTCCCTCGTGCTACTACTTCACAGCGCTGCATCCGTACTAATGATGTCCACAATGTTGGCAATACTTCAAGACATCATACCTTCTTTGAGATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCAATGGGCATGGGACCTATCTACTGTTGAGTTTGGTTTGCCTTCTGAAAGATTATGGATTAGTGTTTATCAAGATGATGATGAGTCTTTTCAATTATGGTCTCAACAGGTTGGTGTTCCCGTTGAGCGAATAAAGAGGTTGGGTGAAGACGACAACTTTTGGACCAGTGGAGTCACGGGTCCATGTGGTCCTTGCTCCGAAATTTATTATGATTTTCATCCCGAGAGGGGATACATCGATGCCGATCTTGGTGATGATACGCGTTTTATAGAGTTCTACAATCTAGTATTCATgcaatacaataaaaaagacgATGGTTCTCTTGAACCTCTAAAACAGATGAACATAGATACTGGGCTCGGTCTAGAGCGCATGGCTCGCATTCTTCAAAAGGTTCCAAACAACTATGAAACTGACTTGATTCTCCCCATCATAGAGAAGGCGTCTGAATTAGCAAATGTTTCATATGGCATTTCTGATGACCAGACAAAGAGGTATCTGAAAATTGTAGGAGATCACATGCGTGCAATTGTGTTTCTCATCTCTGACGGGGTCGTCCCATCAAATGTTGGGAGGGGTTATGTAGTTCGACGGCTTATCAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAAGGTGATGGTAGGGGAGACCTTGAAGGAGCATTTTTACCTACTATTGCTGAGAAAGTAGTAGAATTAAGTACACACATTGATGCTGATGTGAAGAACAGAGCACCCAGAATCCTCGAGGAGTTGAAGAGGGAAGAGCTTCGGTTTGTGCAGACGCTGGAAAGAGGAGAGAAGTTGCTTGATGAAAAGCTTGCAGATGCTATATCAAGTGCCGAAAGAAATGGATCTGTACCTTGCTTGGCTGGTGAAGATGTGTTTATTTTGTATGACACTTATGGTTTCCCCATGGAAATAACAAAAGAAGTTGCTGAAGAGCGTGGTGTGAGTATTGACATGAATGGTTTTGATATTGAGATGGATAAGCAAAGGCGTCAATCTCAAGCTGCACACAATACTGTCAAGCTTGCTATTGGAAGCGGGACAAATATTGCAGACAATGTACCTGACACTGAATTTATTGGATATGAAAGTCTTTATTGTAAAGCTATTGTAGCAAGTCTAGTGGTAAATGGTGATCCAGCTGTACAGGTTAGTGAAGGGAGTAATGTGGAAGTTTTGCTAAACAAGACTCCATTTTATGCTGAATCTGGAGGACAAATTGGAGATCATGGTTTTCTGTATATATCAGAGGGTGAGAATCAACCTAAAGCTGTAGTGGAGATAATAGATGTTCAGAAGTCTTTTGGTAATATATTTGTTCACAAGGGTAGAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAACAAGTGGAAGCAACAGTGGATGTAAAGTTGAGGCAACGGGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCCCTTAAAAAAGTCATTGGTCAGGAGACCTCTCAAGCTGGTTCTTTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGCCCACTTCTTGACAGTGAGCTTGCAGAAATTGAAGTGCTGATCAACGGATGGATTGAGAATGCGATTCTTCTTCAGACCAAAGTGATGCCTCTTGCTGATGCAAAAAGAGCAGGAGCAATTGCAATGTTTGGAGAAAAATATGGGGAAGAGGTACGTGTGGTAGAAGTTCCTGGAGTATCGATGGAACTTTGTGGTGGGACTCATGTCAGTAATACTTCTGAAATTCGTGGTTTTAAAGTAATTTCAGAGCAGGGTATTGCATCTGGTGTCAGGCGAATAGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATGTCAATGCCCGAGATTCTTATCTGAAACAGCTATGTTCCACTCTCAAAGTTAAACCTGAAGAAGTAACTGCGAGGATAGAAAACCTTTTAGAGGAGTTACGGGTAGCAAGAAATGAAAATTCGGCTGTGCGTGCAAAAGCAGCAGTCTACAAAGCTTCAGTTATTGCAAGCAGAGCGTTTTTGGTGGGGAACTCAAAACAGTACAGGATACTAGTTGAGTGCTTGGATGATGTTGATGCGGAGTCACTTAAAAGTGCCGCAGAATATTTAATGGAAACACTGGCAGATCCAGCAGCTATTGTTCTGGGCTCATGTCCAGGTGAAGGGAAGGTTAGTCTAGTGGCTGCTTTTACTCCAGGGGTGGTTGATCAGGGGATTCAGGCAGGTAAGTTTATTGGACAGATAGCAAAATTATGTGGTGGAGGAGGAGGTGGAAGGCCCAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGATAATTTGGCTGGTGCTCTCGAGAAAGCTAAGTCAGAGCTTATAGCTCATCTTTGTGAAAATGGGAACTAA 2925 0.4198 MEGLAVPFPHLLPLPPFPKLAAAAAAISTSTSTGGGGGFISLKQQLQLRPRRRSPYCTSSSSSSSSHSQPEGERVSGDSIRERFLNFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGNVPRQVPRATTSQRCIRTNDVHNVGNTSRHHTFFEMLGNFSFGDYFKKQAIQWAWDLSTVEFGLPSERLWISVYQDDDESFQLWSQQVGVPVERIKRLGEDDNFWTSGVTGPCGPCSEIYYDFHPERGYIDADLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVPNNYETDLILPIIEKASELANVSYGISDDQTKRYLKIVGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPTIAEKVVELSTHIDADVKNRAPRILEELKREELRFVQTLERGEKLLDEKLADAISSAERNGSVPCLAGEDVFILYDTYGFPMEITKEVAEERGVSIDMNGFDIEMDKQRRQSQAAHNTVKLAIGSGTNIADNVPDTEFIGYESLYCKAIVASLVVNGDPAVQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGENQPKAVVEIIDVQKSFGNIFVHKGRVQKGVVEVGKQVEATVDVKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDSELAEIEVLINGWIENAILLQTKVMPLADAKRAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKVISEQGIASGVRRIEAVAGEAFIEYVNARDSYLKQLCSTLKVKPEEVTARIENLLEELRVARNENSAVRAKAAVYKASVIASRAFLVGNSKQYRILVECLDDVDAESLKSAAEYLMETLADPAAIVLGSCPGEGKVSLVAAFTPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPDNLAGALEKAKSELIAHLCENGN 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00012 974 CDD AlaRS_core 78 307 - -
Tsu07g00012 974 Hamap Alanine--tRNA ligase [alaS]. 76 969 IPR023033 GO:0004813
Tsu07g00012 974 Coils Coil 820 840 - -
Tsu07g00012 974 MobiDBLite consensus disorder prediction 47 73 - -
Tsu07g00012 974 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 312 521 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Tsu07g00012 974 TIGRFAM alaS: alanine--tRNA ligase 80 948 IPR002318 GO:0000166|GO:0005737
Tsu07g00012 974 Pfam tRNA synthetases class II (A) 80 642 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Tsu07g00012 974 Hamap Probable alanine--tRNA ligase, chloroplastic. 67 971 IPR027522 GO:0009507
Tsu07g00012 974 SMART tRNA_SAD_4 741 784 IPR012947 GO:0004812|GO:0005524|GO:0043039
Tsu07g00012 974 MobiDBLite consensus disorder prediction 46 77 - -
Tsu07g00012 974 PRINTS Alanyl-tRNA synthetase signature 143 154 IPR002318 GO:0000166|GO:0005737
Tsu07g00012 974 PRINTS Alanyl-tRNA synthetase signature 265 276 IPR002318 GO:0000166|GO:0005737
Tsu07g00012 974 PRINTS Alanyl-tRNA synthetase signature 292 305 IPR002318 GO:0000166|GO:0005737
Tsu07g00012 974 PRINTS Alanyl-tRNA synthetase signature 343 359 IPR002318 GO:0000166|GO:0005737
Tsu07g00012 974 PRINTS Alanyl-tRNA synthetase signature 367 380 IPR002318 GO:0000166|GO:0005737
Tsu07g00012 974 Gene3D - 712 765 - -
Tsu07g00012 974 Gene3D - 857 965 - -
Tsu07g00012 974 SUPERFAMILY Translation proteins 535 640 IPR009000 -
Tsu07g00012 974 Pfam DHHA1 domain 821 963 IPR003156 GO:0003676
Tsu07g00012 974 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 76 964 - -
Tsu07g00012 974 SUPERFAMILY Class II aaRS and biotin synthetases 77 311 IPR045864 -
Tsu07g00012 974 Gene3D - 788 849 - -
Tsu07g00012 974 PANTHER ALANYL-TRNA SYNTHETASE 76 964 - -
Tsu07g00012 974 Gene3D - 527 640 - -
Tsu07g00012 974 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 75 797 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Tsu07g00012 974 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 741 784 IPR012947 GO:0004812|GO:0005524|GO:0043039
Tsu07g00012 974 SUPERFAMILY ThrRS/AlaRS common domain 640 799 IPR018163 GO:0000166
Tsu07g00012 974 Gene3D - 651 786 - -
Tsu07g00012 974 Gene3D Bira Bifunctional Protein; Domain 2 75 308 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00012 Tsu-Chr7 166530 175099 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00012 K01872 - gmx:100817906 1585.47