Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00011 ATGAGGTTGGCAATCCCAATAGTAACATTAATAATAGTTATACTAGGAAGCTGCTCTGCAGAGCAATGCGGTAGACAAGCTGGGGGTGCCCTGTGCCCCGGGGGATTATGCTGCAGCCAGTTTGGTTGGTGTGGATCAACCACAGACTACTGCGGAGATGGGTGCCAGAGTCAATGTAGTGGAAGCAGTGGTGGGAGTGGCCTTGGTAGCCTCATCTCCAGGGACACTTTCAACCAGATGCTCAAGCATAGGGATGACAGTGCCTGTCAGGGGAAAGGTTTTTACACTTATGACGCTTTCATTTCAGCTGCCAAGGCTTTCCCCAACTTCGCCAATAACGGAGATACTGCTACTAAAAAAAGGGAGATTGCTGCTTTTTTGGGTCAAACTTCTCACGAAACAACCGGTGGATGGGCAACTGCACCAGATGGTCCATATGCTTGGGGATACTGCTTTCTCAGAGAACAGAATCCCAGCGCCTACTGTCAACCAAGCTCTGAATTCCCATGTGCTTCTGGCAAGCAATACTACGGCAGAGGTCCCATTCAGATATCTTGGAATTACAACTACGGACGGTGTGGAAGAGCAATTGGTGTTGACTTGCTCAATAATCCAGACCTGGTCGCCACTGACCCTGTTATATCCTTCAAGACTGCTTTGTGGTTCTGGATGACACCTCAGTCACCAAAGCCATCATGCCATGACGTTATCACCGGTGGATGGAATCCTTCTAGTGCAGATCGTGCGGCGGGGAGACTGCCGGGATACGGGACGGTGACCAACATCATTAACGGGGGACTTGAATGCGGGAGAGGACAGGATAGCAGAGTGCAGGATCGAATTGGATTTTACAAGAGATACTGTGACATATTTGGAGTTGGATACGGAGATAATCTTGACTGTTATTCTCAGAGGCCATTTGGATCTTCactatcattatcatcactctTGCTCAACACCATCGCCACCGCCTAG 975 0.4851 MRLAIPIVTLIIVILGSCSAEQCGRQAGGALCPGGLCCSQFGWCGSTTDYCGDGCQSQCSGSSGGSGLGSLISRDTFNQMLKHRDDSACQGKGFYTYDAFISAAKAFPNFANNGDTATKKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFLREQNPSAYCQPSSEFPCASGKQYYGRGPIQISWNYNYGRCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWNPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGVGYGDNLDCYSQRPFGSSLSLSSLLLNTIATA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00011 324 CDD ChtBD1_GH19_hevein 21 53 - -
Tsu07g00011 324 ProSitePatterns Chitinases family 19 signature 2. 214 224 IPR000726 GO:0004568|GO:0006032|GO:0016998
Tsu07g00011 324 ProSitePatterns Chitinases family 19 signature 1. 89 111 IPR000726 GO:0004568|GO:0006032|GO:0016998
Tsu07g00011 324 SUPERFAMILY Lysozyme-like 68 308 IPR023346 -
Tsu07g00011 324 Gene3D - 20 62 IPR036861 GO:0008061
Tsu07g00011 324 PIRSF Endochitinase 1 308 IPR016283 GO:0004568|GO:0005975
Tsu07g00011 324 SMART ChitinBD_3 22 59 IPR001002 GO:0008061
Tsu07g00011 324 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Tsu07g00011 324 Pfam Chitin recognition protein 22 59 IPR001002 GO:0008061
Tsu07g00011 324 ProSiteProfiles Chitin-binding type-1 domain profile. 20 61 IPR001002 GO:0008061
Tsu07g00011 324 PRINTS Chitin-binding domain signature 30 38 IPR001002 GO:0008061
Tsu07g00011 324 PRINTS Chitin-binding domain signature 38 45 IPR001002 GO:0008061
Tsu07g00011 324 PRINTS Chitin-binding domain signature 45 52 IPR001002 GO:0008061
Tsu07g00011 324 ProSitePatterns Chitin recognition or binding domain signature. 32 51 IPR018371 GO:0008061
Tsu07g00011 324 Gene3D Endochitinase, domain 2 154 210 - -
Tsu07g00011 324 Gene3D - 71 302 - -
Tsu07g00011 324 SUPERFAMILY Plant lectins/antimicrobial peptides 22 62 IPR036861 GO:0008061
Tsu07g00011 324 PANTHER CHITINASE-RELATED 8 310 - -
Tsu07g00011 324 PANTHER CHITINASE 2 8 310 - -
Tsu07g00011 324 CDD chitinase_GH19 72 301 - -
Tsu07g00011 324 Pfam Chitinase class I 71 301 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00011 Tsu-Chr7 157894 159248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00011 20 316 Glycoside Hydrolase AT3G12500 71.287 2.24e-160 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00011 K20547 - qsu:111994365 496.508