Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00008 atgaacgAAACAGATGAGAAGAGGGCAGCAGTACTACGGGAATGGTTCGATCGAGTTGACTCAGACAAGAGTGGAAGCATAACTGCGCTCCAACTCAagACAGCTCTAGCTGTGGGAAACCTTGAATTTTCCCTCTCAGTGGTTCAGCAGATGATCAGGATTTATGATTTTGACAGGAATGGTACCATGAGTTTTCAAGaatttgtTGCCCTCAACAACTTCCTTCTCAAGGTTCAGCATGCATTTTCTGACATAGAAAgGGGTCGTGGTTTTCTTTTGCCTGATGACGTGTTTGAGGCTTTGGTGAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTATTCTGTCTGCGAGAGCTTTGATCAGAGTAAAAATGGGAGGTTTCGGCTGGATGACTTCATATCACTCTGTATGTTCTTACAATCAGCTCGGAATCTATTTAATTCCTTTGATACCGCGAAACAAGGCAGAGTTACTCTCGATCTGAATCAGTTTGTCTATTGTAaTGCCAACTGTAGGATATGA 525 0.4133 MNETDEKRAAVLREWFDRVDSDKSGSITALQLKTALAVGNLEFSLSVVQQMIRIYDFDRNGTMSFQEFVALNNFLLKVQHAFSDIERGRGFLLPDDVFEALVKIGFMLDSPAFYSVCESFDQSKNGRFRLDDFISLCMFLQSARNLFNSFDTAKQGRVTLDLNQFVYCNANCRI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00008 174 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Tsu07g00008 174 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Tsu07g00008 174 PANTHER PEFLIN 6 169 - -
Tsu07g00008 174 SUPERFAMILY EF-hand 6 168 IPR011992 -
Tsu07g00008 174 PANTHER PEFLIN 6 169 - -
Tsu07g00008 174 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Tsu07g00008 174 Pfam EF-hand domain pair 11 70 IPR002048 GO:0005509
Tsu07g00008 174 Gene3D - 1 171 - -
Tsu07g00008 174 SMART efh_1 47 75 IPR002048 GO:0005509
Tsu07g00008 174 SMART efh_1 11 39 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00008 Tsu-Chr7 124160 130429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00008 6 136 EF-hand Containing Proteins AT5G04870 27.536 1.36e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00008 - - gmx:100814189 313.923