Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00004 ATGAATGGAGCTGTTATTGTTGCTGTTGCCGCCGCTATTGGAAATTTATTGCAAGGATGGGATAATGCGACTATTGCAGGGTCTATTTTATACATAAAGAGGGAATTTCAATTAGAAAGTGAACCCACAGTTGAAGGTCTAATTGTAGCTATGTCACTTATTGGAGCCACCGTGGTTACTACGTGCTCCGGAGCCCTATCAGACTTGTTTGGACGACGCCCTATGTTGATTATCTCTTCCCTCCTTTATTTTGTTAGTTCTCTTGTCATGTTTTGGTCACCAAATGTTTATATACTCCTCTTTGCAAGACTTTTAGATGGCTTGGGAATTGGTTTGGCAGTTACCTTGGTACCTCTTTATATATCTGAGATAGCTCCTCCTGAGATTAGGGGATCACTCAATACACTTCCACAGTTCACTGGTTCTGCTGGTATGTTTTTATCTTACTGTATGGTGTTTGGAATGTCACTAACCAAGACACCAAGCTGGAGACTCATGTTGGGTGTTCTGTCAATCCCCtctcttatttattttgcaCTAACATTATTGTTATTGCCGGAGTCTCCAAGATGGCTTGTTAGTAAAGGTCGAATGCTTGAGGCTAAACAAGTTTTACAGGGCCTTCGTGGATGTGAAGATGTTGCTGGTGAGATGGCTTTACTGGTTGAGGGTCTAGGAGCCGGGGGTGATACATCCATAGAAGAGTACATGATAGGTCCAGCTAATGAATTAGCTGATGAAGAGGATCCATCTACAAATAAAGATCATATAAAATTGTATGGGACTGAACATGGCCAATCTTGGGTTGCCAGACCTGTCACTGGAGGACAAAGTTCTGCCGGCCTTATATCTAGGAAAGGAAGCATGGCAAATCCAAGTGGTCTAGTGGACCCTTTGGTGACCCTATTTGGTAGTGTCCATGAGAAGGTCCCGGAAAATAGAATGGGAAGTGCTCTTTTTCCACACTTTGGAAGCATGTTCAGTATTGGGGGAAATCAACAAAGAAATGAAGATTGGGATGAAGAAAGCCTTGCTAGAGAGGGTGATGACTATATCTCTGATGCTGCTGCCGGTGATTCTGATGACAATTTGCATAGTCCATTAATTTCACGTCAAACAACTAGTATGGATAAGGAGATGCCTCCCCCTCCTGCTGCACAAGGCAGCCTTTCAAACATAAGGCAAAGTAGTCTTTTACAAGGTGGGAATGCAGCAGGAGAACCTGCTGTTGGGAGTACTGGAATTGGTGGTGGTTGGCAGTTAGCTTGGAAATGGTCTGAACAAGAGGGCCCAGATGGAAAGAAGGAAGGTGGTTTCAAGAGAATATATTTACACCAAGAAGGTGGTTCTGGATCTAGACGTGGATCTGTTGTTTCACTTGCTGGCGGTGATGTGCCAACAAATATTGGTGAGGGTGTACAAACTGCTGCTCTTGTGAGTCAACCAGCTCTTTATAACAAGGAGCTCATGCATCAACATCCAGTTGGACCCGTTATGGTTCATCCATCTGAAACAGCTGCAAAAGGGCCAAGTTGGAATGATCTTTTTGAACCGGGGGTGAAGCATGCACTGTTTGTAGGGGTGGGACTTCAAATTCTTCAGCAGTTCTCTGGTATAAATGGAGTCCTCTACTATACACCACAAATTCTAGAACAGGCAGGTGTTGGTTTTCTACTTTCAAACTTGGGACTTAGTTCTACTTCATCATCTTTTCTAATTAGTGCAGTGACAACCTTGTTGATGCTTCCTAGTATAGCTATTGCCATGAGGCTAATGGATATTTCTGGTAGAAGGACCTTACTGCTCACTACAATCCCTATCTTGATAGTATCTCTTATCATATTAGTCCTAGGGGGTCTTGTGGATTTGGGCAGCACTGCAAATGCATCAATCTCAACCATTAGTGTTgttgtctatttttgtttctttgtcaTGGGATTTGGTCCAATTCCCAATATACTTTGTGCTGAGATCTTCCCAACTCGAGTTCGTGGTCTTTGCATTGCCATATGTGCTCTTACCTTTTGGATATGCGACATCATTGTCACCTATTCACTCCCAGTTATGTTGAATTCAATGGGTCTTGGTGGTGTTTTTGGTTTGTATGCAATTGTGTGCTTCATAGCTTGGGTGTTTGTCTTCTTAAAAGTTCCAGAAACCAAAGGCATGCCACTTGAAGTCATCATTGAGTTCTTCTCCGTTGGAGCAAAACAGGTTGACGCTGCCAAAAACAATTAA 2238 0.4236 MNGAVIVAVAAAIGNLLQGWDNATIAGSILYIKREFQLESEPTVEGLIVAMSLIGATVVTTCSGALSDLFGRRPMLIISSLLYFVSSLVMFWSPNVYILLFARLLDGLGIGLAVTLVPLYISEIAPPEIRGSLNTLPQFTGSAGMFLSYCMVFGMSLTKTPSWRLMLGVLSIPSLIYFALTLLLLPESPRWLVSKGRMLEAKQVLQGLRGCEDVAGEMALLVEGLGAGGDTSIEEYMIGPANELADEEDPSTNKDHIKLYGTEHGQSWVARPVTGGQSSAGLISRKGSMANPSGLVDPLVTLFGSVHEKVPENRMGSALFPHFGSMFSIGGNQQRNEDWDEESLAREGDDYISDAAAGDSDDNLHSPLISRQTTSMDKEMPPPPAAQGSLSNIRQSSLLQGGNAAGEPAVGSTGIGGGWQLAWKWSEQEGPDGKKEGGFKRIYLHQEGGSGSRRGSVVSLAGGDVPTNIGEGVQTAALVSQPALYNKELMHQHPVGPVMVHPSETAAKGPSWNDLFEPGVKHALFVGVGLQILQQFSGINGVLYYTPQILEQAGVGFLLSNLGLSSTSSSFLISAVTTLLMLPSIAIAMRLMDISGRRTLLLTTIPILIVSLIILVLGGLVDLGSTANASISTISVVVYFCFFVMGFGPIPNILCAEIFPTRVRGLCIAICALTFWICDIIVTYSLPVMLNSMGLGGVFGLYAIVCFIAWVFVFLKVPETKGMPLEVIIEFFSVGAKQVDAAKNN 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00004 745 Gene3D MFS general substrate transporter like domains 505 743 IPR036259 -
Tsu07g00004 745 PANTHER - 1 740 - -
Tsu07g00004 745 PANTHER TONOPLAST MONOSACCHARIDE TRANSPORTER 2 1 740 - -
Tsu07g00004 745 PRINTS Sugar transporter signature 15 25 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu07g00004 745 PRINTS Sugar transporter signature 100 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu07g00004 745 PRINTS Sugar transporter signature 534 544 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu07g00004 745 PRINTS Sugar transporter signature 633 654 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu07g00004 745 PRINTS Sugar transporter signature 656 668 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu07g00004 745 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 721 IPR020846 GO:0022857
Tsu07g00004 745 Gene3D MFS general substrate transporter like domains 2 256 IPR036259 -
Tsu07g00004 745 ProSitePatterns Sugar transport proteins signature 2. 105 130 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tsu07g00004 745 ProSitePatterns Sugar transport proteins signature 1. 63 80 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tsu07g00004 745 CDD MFS_GLUT_like 522 719 - -
Tsu07g00004 745 SUPERFAMILY MFS general substrate transporter 9 726 IPR036259 -
Tsu07g00004 745 Pfam Sugar (and other) transporter 7 228 IPR005828 GO:0016021|GO:0022857|GO:0055085
Tsu07g00004 745 Pfam Sugar (and other) transporter 508 729 IPR005828 GO:0016021|GO:0022857|GO:0055085
Tsu07g00004 745 CDD MFS_GLUT_like 14 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00004 Tsu-Chr7 63058 65667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00004 1 745 Organic Solute Cotransporters AT4G35300 72.059 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00004 - - mtr:MTR_3g118530 1248.03