Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00002 ATGGATGTCAGTGGCAATTCTCTTCCTTCTGCACCTGATGGGGTAAAGAGAAAAGTATGCTATTTCTATGATCCAGATgttggtaattattattatgggCAAGGTCATCCCATGAAGCCACATCGTATCCGGATGACACATGCCCTTCTTGCCCACTATGGATTGCTTCAGCACATGCAGGTTCACAAGCCTTTTCCTGCTAGAGACAGGGACCTTTGCCGTTTTCATGCCGATGATTATGTTGCATTTCTTCGAAGCATAACACCTGAAACACAGCAGGATCATATGAGACAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTCTTTGATGGTCTATACTCTTTCTGTCAAACTTATGCCGGAGGTTCAGTTGGTGGTGCTGTCAAGTTGAATCATGACCAATGTGATATTGCTGTCAACTGGGCTGGTGGGCTGCATCATGCCAAGAAGTGTGAGGCCTCTGGATTTTGCTATGTTAATGATATAGTGCTTGCAATCTTAGAACTTCTTAAACAGCACGAGCGTGTTCTGTATGTGGACATTGATATCCACCATGGAGATGGTGTGGAGGAAGCTTTCTACACTACTGACAGAGTCATGACTGTTTCTTTCCATAAATTTGGTGATTATTTTCCTGGTACCGGCGACTTGCGTGATATTGGATATGGAAAGGGAAAATACTACTCTCTTAATGTCCCACTTGACGACGGCATTGATGATGAGAGTTATCATTTGTTGTTCAAACCTTTAATCGGCAAAGTAATGGAAGTCTTTAGGCCCGGTGCAGTAGTTCTCCAGTGTGGGGCAGACTCCTTATCTGGAGACAGGTTGGGATGTTTTAATCTTTCAATTAGGGGTCATGCAGAGTGTGTCAAATACATGAGATCATTCAATGTTCCACTCTTGCTACTAGGTGGTGGCGGCTACACCATTCGGAATGTTGCTCGCTGTTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCAGAGCATGAGTATTATGAATATTTCGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACatggaaaacaaaaatactCGACATTTACTTGATAATATCCGATCTAAGCTACTTGAGAATCTTTCAAAGCTGCAGCATGCTCCCAGCGTTCAATTTCAGGAGAGGCCTCCTGATTCTGATCTCGGAGAGGAAGTTGAAGATCATGATGATAGAGACGAGCATTGGGATCAGGACTCTGAGATGGATGTTGATGTTGAACGCGATATTCTCCCAAGCAAAGTAAAGAGAGAAATTGTTGAACCTCAGCTCAATGATCTGGAGGACCTGAAAAGAACTAGAGAGCACTTGAGGGCCTCCGATACTGCAGTAGTTGAAACAAGCGTGAAGGCTTTAGATATTTGTTCTGAGCCAGTTGATGAAGATATTGTGAAAGAGGAAGAGAATACTGTGAATGATTTGACCAGAGAGTGA 1482 0.4244 MDVSGNSLPSAPDGVKRKVCYFYDPDVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVAFLRSITPETQQDHMRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDLRDIGYGKGKYYSLNVPLDDGIDDESYHLLFKPLIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPEHEYYEYFGPDYTLHVAPSNMENKNTRHLLDNIRSKLLENLSKLQHAPSVQFQERPPDSDLGEEVEDHDDRDEHWDQDSEMDVDVERDILPSKVKREIVEPQLNDLEDLKRTREHLRASDTAVVETSVKALDICSEPVDEDIVKEEENTVNDLTRE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00002 493 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Tsu07g00002 493 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Tsu07g00002 493 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Tsu07g00002 493 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Tsu07g00002 493 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Tsu07g00002 493 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Tsu07g00002 493 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Tsu07g00002 493 MobiDBLite consensus disorder prediction 384 419 - -
Tsu07g00002 493 Pfam Histone deacetylase domain 36 324 IPR023801 -
Tsu07g00002 493 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
Tsu07g00002 493 PIRSF HDAC_I_euk 4 466 IPR003084 GO:0004407|GO:0016575
Tsu07g00002 493 PANTHER HISTONE DEACETYLASE 19 3 490 - -
Tsu07g00002 493 PANTHER HISTONE DEACETYLASE 3 490 - -
Tsu07g00002 493 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Tsu07g00002 493 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Tsu07g00002 493 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Tsu07g00002 493 Gene3D Histone deacetylase domain 15 388 IPR037138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00002 Tsu-Chr7 27694 37684 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00002 K06067 - gmx:100795375 940.258