Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03389 ATGGCGTTGAAGTTGAAGGATACATTTTACATATCACATGGATCACCAACGTTGTCAATAGATGAATCATTTGTAGCAAGAAAGTTTCTACAATCATGGAAGAAAGATGTGTATGAAGAGAAACCAAAATCTATTTTGGTTATTTCTGGTCATTGGGACACCACCGTACCAACCGTCAACGTTATTCAAACAACCAATGATACAATCTGTGACTTCAACGGTTTTCCCAAACCCATGTACCagCTCAAATATCCAGCACCTGGAGCTCCACATTTAGCAAAAAGGGTGAAGGAACTACTGAACAAATCCGGTTTCAACCGCGTCAACGATGACAAAAAAAGAGGACTTGATCATGGTGCTTGGGTTCCACTCATGTTAATGTATCCAGAAGCTGATATTCCAGTTTGTCAGCTTTCTGTTCAATCTAACTTAGATGGAACTTATCATTATAACATTGGAAAAGCATTGGCTCCTCTTAAAAATGAAGGTGTGTTGATAATTTGGGAGCACTTAACTTACATGCAGGTGCATGTGTTGCTCCTTGGGCCTTAG 552 0.3949 MALKLKDTFYISHGSPTLSIDESFVARKFLQSWKKDVYEEKPKSILVISGHWDTTVPTVNVIQTTNDTICDFNGFPKPMYQLKYPAPGAPHLAKRVKELLNKSGFNRVNDDKKRGLDHGAWVPLMLMYPEADIPVCQLSVQSNLDGTYHYNIGKALAPLKNEGVLIIWEHLTYMQVHVLLLGP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03389 183 CDD 45_DOPA_Dioxygenase 8 167 IPR014436 GO:0008270|GO:0016701
Tsu06g03389 183 Pfam Catalytic LigB subunit of aromatic ring-opening dioxygenase 8 167 IPR004183 GO:0006725|GO:0008198|GO:0016491
Tsu06g03389 183 PANTHER EXTRADIOL RING-CLEAVAGE DIOXYGENASE-LIKE 4 167 - -
Tsu06g03389 183 Gene3D - 2 171 - -
Tsu06g03389 183 PANTHER UNCHARACTERIZED 4 167 - -
Tsu06g03389 183 SUPERFAMILY LigB-like 8 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03389 Tsu-Chr6 44814606 44817271 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03389 K15777 - gmx:100798236 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03389 06 44814606 44817271 Tsu06g03389 06 44814606 44817271 ECH