Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03285 ATGAGTTTCGCCGCATACAAGATGATGCAATGGCCAACCGGCGTAGACAATTGCGCTTCCGGTTATCTCACTCATTCCCGTTCCGATTTCACACCTCGTATTCCATCTCTTCAACCCGACGACGATCTCGACTCTGATTGGGTCCCACAACCTCCTGACCTTGCTCCTGTTCCCAATCTCGTCATTACTGCTGCTAATATTCTCGAAGTTTATATTGTTCGTCTTCAACTTGATCCTCCTAAGTCTTCTTCTGATTCTCGTGTTCTCGATGGGATTGCTGGTGCTTCGCTTGAACTCGTTTGTCATTACAGGTTGCATGGCAATGTTGAAAGCGTGGCTGTGTTGAGCATTGGGGGTGGTGATGCTTCTAGGAGGCGAGATTCTATCATCTTAACTTTTAAGGATGCAAAGATTTCAGTTCTAGAGTATGATGATTCTATCCACGGACTTCGTACCAGTTCTTTGCATTGTTTTGAGGGTCCAGAATGGCTTCATTTGAAAAGAGGTAGAGAACAATTTGCAAGAGGTCCGGTGGCAAAGGTTGATCCTCAAGGAAGGTGTGGTGGAGTTCTTGTATATGATTTGCAAATGATAATACTAAAGACTACTCAGGCTGGTTCTGGTTTAGTTGGGGAGGATGACGTGTCAGGTTCTGGAGGTGCAGTTGCTGCTCGAATCGACTCATCTTATATGATAAATCTGCGTGACTTGGATATGAGGCATGTAAAAGATTTCACATTTGTTCATGGCTATATCGAACCTGTGATGGTGATCTTGCATGAACGTGAGCTTACTTGGGCTGGGCGTGTCTCATGGAAAAATCATACTTGCACGATATCAGCACTTAGCATAAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTCCCCCACGATGCCTACAAGCTTCTTGCAGTGCCCTCGCCAATTGGtggtgttcttgtcattggtgCGAACACTATTCATTATCACAGTCAGTCTGCTTCATGTGCATTGGCCTTGAACAGCTATGCTGTTTCCCTTGATAATAGTCAGGAGATGCCAAGATCAAGTTTCAATGTGGAACTTGATGCTGCCAATGCAACTTGGTTGGTGAATGATGTAGCCTTGCTGTCAACAAAAACTGGTGAACTGCTATTGCTTACTCTTATTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTATCATCTggtATTACGACAATTGGAAATTCTATGTTTTTTCTCGCCAGTCGATTAGGAGACAGTATGCTGGTGCAATTTTCTTGTGGATCGGGTGTTTCAATGTCGTCATCCAGTCTAAAAGAAGAGGTTGGTGATTATGACGTAGATGCTTCTTCAGCAAAGAGATTGCGGAGGTCGCCTTCTGATGCTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGATCTGCTCCAAATAGAACAGAATCAGCACAGAAATCCTTCTCATTTGCAGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGATTTTTCGTACGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGAATAGCCAAACAGAGTAACTATGAATTGGTGTGTTGTTCTGGTCATGGAAAAAATGGTTCTCTGTGTGTTCTTCGACAATCAATTCGTCCGGAAGTGATTACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTTTATCATAAGAGCACACGTTCACTTAATGCTGACTCATCTAAGCTggctgatgatgaagatgaatatCATGCATACCTTATTATAAGTTTGGAGTCACGTACTATgGTACTAGAAACAGCtgatcttctgagtgaggttaCCGAAAGTGTTGACTATTATATTCAAGGAAAAACACTTGCTGCAGGGAATTTATTTGGAAGACGTCGAGTTATTCAAGTCTACGAACGTGGTGCTCGAATTCTGGATGGTTCTTTTATGACCCAAGATGTAAGCTTTGGAGCCTCTAACTCTGAATCTAATTATGGATCTGAGAGTGCTTTGGCTCTATCTGTTTCTATCGCTGATCCATATGTCTTGCTCAGAATGAGTGATGGAAGTGTTCGACTTTTGGTTGGAGATCCTAGCACCTGCACCATTTCTGTCACTTCTCCAGCTTCATTTGAGGGATCAAAGGGATCGGTTTCATCATGTACACTCTACCATGATAAAGGACCCGAACCATGGCTAAGGAAGACAAGTACTGATGCATGGCTTTCTACCGGGGTTGGTGAAGCCATTGATGGCACTGATGGTGCGGTTCAGGACCATGGGGATGTTTATTGTGTTGTATGTTACGAAAATGGCAACCTTGAAATATTTGATGTACCCAATTTCAGCTGTGTTTTTTCCGTGGAAAATTTTCTGTCTGGAAAGAGCCACCTTGTTGATGCTCTGACAAAAGAGGTGCCAAAAGATTCTCAAAAGGGGGATAAGGTTTCTGATGGAGCGGTCAGCCAAGGCAGGAAGGATGCCCTGAATATGAAGGTTGTGGAGTTGGCCATGCAGAGATGGTCGGGAAAGCATAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACAATTCTTTGTTACCATGCTTACCTTTATGAAAATCCAGACGGTACTTCTAAGGTTGAGGATTCAATATCAGCTGGTAGCAATACTAGTGTTTCTAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCCTTGGATGTACATGCCAGGGAGGAGACATCAAATGCATCACCTTgtcaacaaattaatattttcaagaATATTGGCAGTCATGAAGGATTCTTCCTATTGGGGTCAAGACCGGCTTGGGTAATGGTGTTGAGAGAACGGCTTCGTGTTCATCCACAGCTATGTGACGGGTCTATTGTTGCTTTCACTGTCCTTCACAATGTAAACTGCAATCATGGCCTCATATATGTTACATCACAGGGTGTTTTAAAGATATGCCAACTGCCTTCTGGCTCAAACTATGATTGCTACTGGCCTGTACAGAAAGTTCCTCTTAAAGCTACTCCACATCAAGTAACTTACTATGCAGAGAAGAATTTGTATCCGATTATTGTTTCATTTCCTGTTCCTAAGCCACTAAATCAAGTCATCACTTTAGTTGACCCAGATGCTAACCATCTGACTGAGAATCAGAATTTGAATTCTGATGAGCAAAACCGCTTTTATACCATTGAAGAATTTGAGGTCCGTATTATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACAAAGGCAACAATACCCATGCAAAGTTCAGAAAATGCTCTCACTGTTAGGATGGTTACACTgatgAATACATCGTCAAAAGAAAACGAAACACTTTTAGCCGTTGGTACTGCTTACGTGCAAGGAGAGGATGTTGCTGCAAGAGGGCGTATACTCCTGTTCTCTTTGGGGAAAAATACTGATAATCCACAAGCTCTGGTTTCAGAGGTGTACTCGAAGGAACTAAAAGGTGCTATATCTGCCATGGCCTCACTTCAGGGTCATCTATTAGTAGCATCTGGTCCAAAAATTATCCTGCACAAGTGGACCGGCACTGAGTTGAATGGTGTTGCATTTTTTGATGTGCCACCACTGCATGTTGTGAGCTTAAATATTGTAAAGAACTTCATCCTTATTGGTGACATCCATAAAAGCATATATTTTCTTAGTTGGAAAGAGCAGGGCTCTCAACTTAGCTTATTAGCCAAGGATTTTGGTTCTCTTGATTGTTTTGCCACAGAATTTTTGATTGATGGAAGTACTCTGAGTCTCATGGTTTCAGATGATCAAAAAAATATCCAGATTTTTTACTATGCACCAAAGATGTCTGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTCGGGGCACATGTGACTAAATTCTTAAGGCTGCAGATGTTATCTACTTCTGATCGAACTGGTTCTGGTCCAGGCTCAGATAAAACCAATCGTTTTGCCTTGTTGTTTGGTACATTGGATGGTAGTATCGGTTGCATTGCTCCTCTTGATGAAATCACATTCCGTAGACTGCAGTCTTTGCAGAAAAAGCTCGTTGATGCCGTTCCCCATGTTGCTGGCCTAAATCCAAGAGCTTTCAGATTGTTCCATTCAAATGGAAAGGCCCATCGACCAGGCCCCGACAGTATAGTTGACTGTGAGCTGCTATGCCATTATGAAATGCTTCAATTGGAGGAACAGCTTGAAATTGCTCACCAGGTTGGAACAACTCGGTCACAAATTCTATCAAATCTAAATGATCTGTCTCTTGGAACAAGCTTCTTGTGA 4335 0.4164 MSFAAYKMMQWPTGVDNCASGYLTHSRSDFTPRIPSLQPDDDLDSDWVPQPPDLAPVPNLVITAANILEVYIVRLQLDPPKSSSDSRVLDGIAGASLELVCHYRLHGNVESVAVLSIGGGDASRRRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVAKVDPQGRCGGVLVYDLQMIILKTTQAGSGLVGEDDVSGSGGAVAARIDSSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKNHTCTISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNSYAVSLDNSQEMPRSSFNVELDAANATWLVNDVALLSTKTGELLLLTLIYDGRVVQRLDLSKSKASVLSSGITTIGNSMFFLASRLGDSMLVQFSCGSGVSMSSSSLKEEVGDYDVDASSAKRLRRSPSDALQDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSLNADSSKLADDEDEYHAYLIISLESRTMVLETADLLSEVTESVDYYIQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESNYGSESALALSVSIADPYVLLRMSDGSVRLLVGDPSTCTISVTSPASFEGSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAVQDHGDVYCVVCYENGNLEIFDVPNFSCVFSVENFLSGKSHLVDALTKEVPKDSQKGDKVSDGAVSQGRKDALNMKVVELAMQRWSGKHSRPFLFGILSDGTILCYHAYLYENPDGTSKVEDSISAGSNTSVSRLRNLRFVRVPLDVHAREETSNASPCQQINIFKNIGSHEGFFLLGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDCYWPVQKVPLKATPHQVTYYAEKNLYPIIVSFPVPKPLNQVITLVDPDANHLTENQNLNSDEQNRFYTIEEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLMNTSSKENETLLAVGTAYVQGEDVAARGRILLFSLGKNTDNPQALVSEVYSKELKGAISAMASLQGHLLVASGPKIILHKWTGTELNGVAFFDVPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGSQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRTGSGPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQKKLVDAVPHVAGLNPRAFRLFHSNGKAHRPGPDSIVDCELLCHYEMLQLEEQLEIAHQVGTTRSQILSNLNDLSLGTSFL 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03285 1444 Pfam CPSF A subunit region 1077 1409 IPR004871 GO:0003676|GO:0005634
Tsu06g03285 1444 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 2 1433 - -
Tsu06g03285 1444 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1 2 1433 - -
Tsu06g03285 1444 Gene3D - 55 445 IPR015943 GO:0005515
Tsu06g03285 1444 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 127 667 IPR018846 -
Tsu06g03285 1444 Gene3D - 966 1351 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03285 K14401 - gmx:100785543 2561.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03285 06 43715137 43732787 Tsu06g03285 06 43715137 43732787 ECH