Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03134 ATGGTTATCAAGGGAATTTCGCCTGATGTTGTCACTTACAGTGCTCTAATTTATGGGTTTTGTATTGTGAGTCAATTAAAAGAAGCGGTTGTTTTGTTGAATGAAATGGTGTTGAAAAACATCAACCCAAATGTTTATACCtttaatatattgattgatgCGTTTTGTAAGGAGGGTAAGATGAAAGAAGCTAAAACTATGTTAGCTATGATGATGAAACAAGGTATGAAACCTAATGTAGTTACTTATAATACTTTAATGGATGGGTTCTGCCTTTGTAATGAAGTGAAAAAGGCcaaatatatattcaatattATGGTTCAAAGGGGAATGATGCCCGATGTTAAGACCTACAGTATCATGATTAATGGATTTTGCAAGAGTAAAATGGTGGATGAAGCTATCAATCTCTTTGAagaaatgtatttaaaaaacaCGATTCCTGATATAGTAACATACAGCACTCTTATTGATGGCTTGTGCAAATCAGGGAGAATTACGTATGCTTGGGAGCTTGTAGATGAGATGAGTGACAGAGGTCAACCGCCCAATGTATTCACTTACAATTCCTTCTTGCACACTTTTTGTAAAAATCATCATCTTGACAAGGCAATTGCATTAGTCAAGAAAATTCAAGACCAAGGTATCTTGCCAGATTTGTACACGTACAGTACCCTAATTGATGGACTTTGCAAAGGTGGTAGGCTTAAGGATGCACTAAAGGTTTTTAAGGATCTTTTGGCTAAAGGATACATTCTAAGTGTCGTAACATACACAACTATGATTGGTGGATTTTGTAATGAGGGCTTGTTTGAAGAAGCATTTGTTTTGCTGTCAGAAATGGAAGATAAGGGTTGCATTCCTGATGCTGTCacttttgaaattattatttgtgCACTCTTCGAAAGCGGTGAGAACGATAAAGCAGAGAAACTTCTTCGTGAAATGATTGCTAGAGGTCTACTATAA 969 0.3447 MVIKGISPDVVTYSALIYGFCIVSQLKEAVVLLNEMVLKNINPNVYTFNILIDAFCKEGKMKEAKTMLAMMMKQGMKPNVVTYNTLMDGFCLCNEVKKAKYIFNIMVQRGMMPDVKTYSIMINGFCKSKMVDEAINLFEEMYLKNTIPDIVTYSTLIDGLCKSGRITYAWELVDEMSDRGQPPNVFTYNSFLHTFCKNHHLDKAIALVKKIQDQGILPDLYTYSTLIDGLCKGGRLKDALKVFKDLLAKGYILSVVTYTTMIGGFCNEGLFEEAFVLLSEMEDKGCIPDAVTFEIIICALFESGENDKAEKLLREMIARGLL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03134 322 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Tsu06g03134 322 Pfam PPR repeat 215 244 IPR002885 -
Tsu06g03134 322 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Tsu06g03134 322 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 322 IPR002885 -
Tsu06g03134 322 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Tsu06g03134 322 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Tsu06g03134 322 Gene3D Tetratricopeptide repeat domain 93 199 IPR011990 GO:0005515
Tsu06g03134 322 Gene3D Tetratricopeptide repeat domain 1 92 IPR011990 GO:0005515
Tsu06g03134 322 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Tsu06g03134 322 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Tsu06g03134 322 TIGRFAM PPR: pentatricopeptide repeat domain 46 80 IPR002885 -
Tsu06g03134 322 TIGRFAM PPR: pentatricopeptide repeat domain 151 185 IPR002885 -
Tsu06g03134 322 TIGRFAM PPR: pentatricopeptide repeat domain 81 115 IPR002885 -
Tsu06g03134 322 TIGRFAM PPR: pentatricopeptide repeat domain 186 219 IPR002885 -
Tsu06g03134 322 TIGRFAM PPR: pentatricopeptide repeat domain 291 321 IPR002885 -
Tsu06g03134 322 TIGRFAM PPR: pentatricopeptide repeat domain 256 290 IPR002885 -
Tsu06g03134 322 TIGRFAM PPR: pentatricopeptide repeat domain 117 149 IPR002885 -
Tsu06g03134 322 TIGRFAM PPR: pentatricopeptide repeat domain 221 252 IPR002885 -
Tsu06g03134 322 TIGRFAM PPR: pentatricopeptide repeat domain 11 45 IPR002885 -
Tsu06g03134 322 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Tsu06g03134 322 PANTHER OS10G0495100 PROTEIN 1 321 - -
Tsu06g03134 322 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 321 - -
Tsu06g03134 322 Gene3D Tetratricopeptide repeat domain 200 322 IPR011990 GO:0005515
Tsu06g03134 322 Pfam PPR repeat family 78 127 IPR002885 -
Tsu06g03134 322 Pfam PPR repeat family 8 57 IPR002885 -
Tsu06g03134 322 Pfam PPR repeat family 148 197 IPR002885 -
Tsu06g03134 322 Pfam PPR repeat family 254 300 IPR002885 -
Tsu06g03134 322 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03134 Tsu-Chr6 41562257 41563225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03134 114 322 Glycosyltransferase AT1G05670 24.186 1.53e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03134 - - gmx:102668851 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03134 06 41562257 41563225 Tsu06g03134 06 41562257 41563225 ECH