Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02916 ATGGCTATGGCTCGTCCTAGAGACATGAAACTAGGAAGCAAGGTTTCTGTTGAGCCTCATAGACATGAAGGTATTTTCATTGCTAGGGGTGAAGAAGATGCTCTTGTTACTAAGAATCTTGTTCCCGGTGAAGCTTTTTACAATGAGCAGAGAGTTACTGTGCAGAATGAGCATGGTACACCGGTTCAGTATAGAATTTGGAACCCTTTCCACTCAAAGTTGGCAGCTGCTGTTTTAAGTGGTCTTGACAACATATGGATTAAACCTGGTTCTAAAGTCCTTTACCTAGGAGCTGCTTCAGGAAAAACCGTTTCTTATGTGTCTGATATTGTTGGTCCAACTGGAGTTGTGTATGCCGTAGAGTTCTCCCACCGAAGTGGACGTGAGTTGGTAAATATGGCGAAGAAACGTACTAATGTTGTTCCCATTATTGAAGATGCTAGACATCCAGTCAAGTATGAAGGGTTAGTTGGCATGGTAGATGTCATATGTTCTGATGTTGCTCAGCCTGATCAGGCAAGAATTTTAGGGCTGAATGCTTCTTATTATCTCAAAGCTGGAGGGCATTTTTTTATATCCATCAAGGCAAGTTGCATAGATCCGACAGTACCTGCAGAGGAAGTGTTCCATAGTGAAGTAAACAAGTTAAGGGCAGATCAATTTAAGCCATTTGAGCAAGTTACTCTTGAACCATTTGAGAGGGACCATGCTTGTATTGTTGGTGGATACAAAATGCCTTGA 741 0.4197 MAMARPRDMKLGSKVSVEPHRHEGIFIARGEEDALVTKNLVPGEAFYNEQRVTVQNEHGTPVQYRIWNPFHSKLAAAVLSGLDNIWIKPGSKVLYLGAASGKTVSYVSDIVGPTGVVYAVEFSHRSGRELVNMAKKRTNVVPIIEDARHPVKYEGLVGMVDVICSDVAQPDQARILGLNASYYLKAGGHFFISIKASCIDPTVPAEEVFHSEVNKLRADQFKPFEQVTLEPFERDHACIVGGYKMP 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02916 246 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 31 244 IPR000692 GO:0003723|GO:0006364|GO:0008168
Tsu06g02916 246 Gene3D Phosphorylase Kinase; domain 1 12 67 - -
Tsu06g02916 246 PIRSF Nop17p 4 246 IPR000692 GO:0003723|GO:0006364|GO:0008168
Tsu06g02916 246 PRINTS Fibrillarin signature 170 199 IPR000692 GO:0003723|GO:0006364|GO:0008168
Tsu06g02916 246 PRINTS Fibrillarin signature 90 111 IPR000692 GO:0003723|GO:0006364|GO:0008168
Tsu06g02916 246 PRINTS Fibrillarin signature 35 54 IPR000692 GO:0003723|GO:0006364|GO:0008168
Tsu06g02916 246 PRINTS Fibrillarin signature 63 82 IPR000692 GO:0003723|GO:0006364|GO:0008168
Tsu06g02916 246 PRINTS Fibrillarin signature 115 132 IPR000692 GO:0003723|GO:0006364|GO:0008168
Tsu06g02916 246 PRINTS Fibrillarin signature 140 169 IPR000692 GO:0003723|GO:0006364|GO:0008168
Tsu06g02916 246 PRINTS Fibrillarin signature 222 243 IPR000692 GO:0003723|GO:0006364|GO:0008168
Tsu06g02916 246 PANTHER BNAA03G47570D PROTEIN 8 246 - -
Tsu06g02916 246 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 8 246 - -
Tsu06g02916 246 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 17 241 IPR029063 -
Tsu06g02916 246 Pfam Fibrillarin 17 244 IPR000692 GO:0003723|GO:0006364|GO:0008168
Tsu06g02916 246 SMART Fibrillarin_2 17 245 IPR000692 GO:0003723|GO:0006364|GO:0008168
Tsu06g02916 246 Gene3D Vaccinia Virus protein VP39 68 245 IPR029063 -
Tsu06g02916 246 ProSitePatterns Fibrillarin signature. 115 129 IPR020813 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02916 Tsu-Chr6 38350846 38355193 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02916 K14563 - gmx:100814656 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02916 06 38350846 38355193 Tsu06g02916 06 38350846 38355193 ECH