Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01426 GCAATATCTCGTTCAATAAGAGAAGCCTACATGCAATTGGAGATACGCCTAACCCTTATGAGAAGGCAATCGCAATTGTTGGCAAGACTTTGGCTCCGTTTGATGATGATAACTTGATTCCATGCTTTGGTTTTGGTGATGCTACCACACATGATCAAGAAGTATTCAGCTTTCATAGTGATCATTCACCATGCCATGGCTTTGAGGAAGTTTTGGATTGctacaaaaaaattgttccaaacTTGAAACTCTCAGGACCAACTTCTTATGCTCCAGTGATTGAGGCTGCCATAGACATAGTTGAGAAAAGTCATGGCCAATTCCATGTATTGGTTATCATTGCAGACGGTCAGgttacAAAAAGTTTAGACTATGATGATAATGAACTCAGTCCTCAAGAAGAGAAAACAATCAAAGCAATTGTTGATGCAAGTGCATATCCACTTGCCATTGTTCTGGTTGGAGTTGGTGATGGACCATGGGAAGACATGGAAAAATTTGATGACATGATTCCAGCACGCGATTTCGACAATTTTCAGTTTGttaatttcacaaaaattatGTCTAAGAACACAAGCCCCACCAAGAAAGAAGCTGCTTTTGCTCTGGCTGCTCTCATGGAAATCCCCTTCCAGTACAAAGCATGTGTCGAATTTCGAAAACTTGGAAGTGTAACAGGAAGAGCAAAGAGAATAGTTCCAAAACCATCTCCTGTTCCTTATTCTCGGCCTGCACCAAGCAATTCACCATCATCAACAATAGATGAGCAAAATCAATCTGCTTGTCCTGTTTGTCTGAGCAATACAAGGGATTTGGCGTTTGGATGTGGGCACATGACTTGCAGAAATTGTGGATCATGGTTAAGTCATTGTCCTTTATGTCGAGTGGGGATCACTAATCGTCTGAGAGTATATAATGGATGA 923 0.3965 NISFNKRSLHAIGDTPNPYEKAIAIVGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLDCYKKIVPNLKLSGPTSYAPVIEAAIDIVEKSHGQFHVLVIIADGQVTKSLDYDDNELSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMEKFDDMIPARDFDNFQFVNFTKIMSKNTSPTKKEAAFALAALMEIPFQYKACVEFRKLGSVTGRAKRIVPKPSPVPYSRPAPSNSPSSTIDEQNQSACPVCLSNTRDLAFGCGHMTCRNCGSWLSHCPLCRVGITNRLRVYNG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01426 306 MobiDBLite consensus disorder prediction 232 256 - -
Tsu06g01426 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 305 IPR013083 -
Tsu06g01426 306 PANTHER UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED 2 305 - -
Tsu06g01426 306 Pfam Copine 8 221 IPR010734 -
Tsu06g01426 306 ProSiteProfiles Zinc finger RING-type profile. 261 294 IPR001841 -
Tsu06g01426 306 Pfam Zinc finger, C3HC4 type (RING finger) 258 298 - -
Tsu06g01426 306 SUPERFAMILY vWA-like 16 167 IPR036465 -
Tsu06g01426 306 SUPERFAMILY RING/U-box 257 301 - -
Tsu06g01426 306 PANTHER COPINE FAMILY PROTEIN 1 2 305 - -
Tsu06g01426 306 SMART ring_2 261 293 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01426 Tsu-Chr6 14029589 14033949 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01426 K16280 - gmx:100790153 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01426 06 14029589 14033949 Tsu08g01628 08 19368117 19375916 PCT