LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu06g01387	atGGACTCTGCTGGGATGATGGAAGGCTTCCTGAAGGGAAAGACTATTCTAGTCACAGGGGCAACCGGCTTCTTAGCGAAagTTTTTGTGGAAAAGATATTAAGGATCCAACCAGAGATTCAAAAAATGTATCTACTTCTAAGATCTTCAAATACTGAATCGGCTGAAAAACGTTTGCAAAATGAGGTTTTCAAGATTGATTTATTTCGCGTACTAAGAGAAAGGTTGGGTGAACATTTTAGTTCTTTCATATCAAAGAAGGTTGTGACAATATCAGGTGATGTTGCTAAAGAAAATTTGGGAATAAAAGATGAAAAGCTTAAAAATGAGATATTTGAAGAGATAGACTTTCTTGTCCATTTTGCTGCATCTACAAAATTTACTGAGagATTTGATATATTGATGGATGTTAATACCAAAGGTGCTTTACATGTCTTGAACTTTGCAAAGAATTGTATAAGAATAAAGGCTTTTGTCCACATCTCGACCGCATATGTATGCGGAGATGCTAAGGATGGACATGCAATTTTACAAGAGAAACCATTTGAGATGGGTCAATCCCTAAAAGAGGACTCCAAATTAGACATACACAAAGAAATGGATTTGATAGACAGAAAATTAGCTGAACTTCAAGCAATGAATGTGGATGAAAATACAACAAAATTTGCAATGAAAGATTATGGAATGGAAAGAGCAAATTTTCATGGTTGGCCGAATACATACACATTTACAAAAGCAATGAGAGAGATGCTTTTAGTGCATCATAAAGATAATATACCTTTGATTATTATACGTCCCACAATGGTAACTAGTACAATAAAGGATCCATTTCCCGGTTGGATTGAAGGTTTAAGAACTATGGACAATTTTATATATAGCTATGGTAAAGGGAAATTGAAATTCTTCATTGGTAATCCCAACACAATTTTAGATGCGATACCTGCAGACATGGTCATCAATTGTGTGATTGCAACCATTTTTATTCATTCAAGTCAACCTCCAAAGAATTTCATCTACCATGTTTCTTCATCATTAAGAAATCCTTTGAGATGTTCTGATTTATGTAATATTTTACATCATTATTTCTTGAAAACCCCTTGCATGAATCAAAATGGAAAGCCAATAATCATTTCCAAGGGAATTATTATGGTGAATTGTTTTGCTGCTTTCAACATTTATATGATAATCCGATATGTCTTGCTACTACAGGTCTTATACTTGGTGAACAAACTTTGTCGACGGAGCTTCCAAGATGTTTATGACAACCAAAGCAGAAAATTTAGTGTGCAACAACAATTGGCAAAACTATATAAACCATTTGTGTATTTTAAGTCCGTCTTTGATGATACCAACGTCGAAATTTTGCGGATGGCAACGAAGGGTCTTAATACAAAAAATGATGAACTAAACTTTGACTCTACTAGTATTGACTGGACAGACTATATGATGAATACACACATCCCTGGCGTCCTTAAGTATCACAAGAAAtag	1491	0.3427	MDSAGMMEGFLKGKTILVTGATGFLAKVFVEKILRIQPEIQKMYLLLRSSNTESAEKRLQNEVFKIDLFRVLRERLGEHFSSFISKKVVTISGDVAKENLGIKDEKLKNEIFEEIDFLVHFAASTKFTERFDILMDVNTKGALHVLNFAKNCIRIKAFVHISTAYVCGDAKDGHAILQEKPFEMGQSLKEDSKLDIHKEMDLIDRKLAELQAMNVDENTTKFAMKDYGMERANFHGWPNTYTFTKAMREMLLVHHKDNIPLIIIRPTMVTSTIKDPFPGWIEGLRTMDNFIYSYGKGKLKFFIGNPNTILDAIPADMVINCVIATIFIHSSQPPKNFIYHVSSSLRNPLRCSDLCNILHHYFLKTPCMNQNGKPIIISKGIIMVNCFAAFNIYMIIRYVLLLQVLYLVNKLCRRSFQDVYDNQSRKFSVQQQLAKLYKPFVYFKSVFDDTNVEILRMATKGLNTKNDELNFDSTSIDWTDYMMNTHIPGVLKYHKK	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu06g01387	496	PANTHER	MALE STERILITY PROTEIN 2-RELATED	9	493	IPR026055	GO:0080019
	Tsu06g01387	496	Pfam	Male sterility protein	18	321	IPR013120	-
	Tsu06g01387	496	Gene3D	-	8	374	-	-
	Tsu06g01387	496	PANTHER	FATTY ACYL-COA REDUCTASE	9	493	-	-
	Tsu06g01387	496	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	7	339	IPR036291	-
	Tsu06g01387	496	Pfam	Male sterility protein	398	494	IPR033640	-
	Tsu06g01387	496	CDD	FAR-N_SDR_e	14	366	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu06g01387	Tsu-Chr6	13145934	13153251	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu06g01387	10	447	Acyl Lipid Metabolism Gene Families	AT3G44560	49.545	1.22e-145	423

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu06g01387	K13356		-	gmx:100793736	516.538