Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01358 AtgaagGTCGAAGCTAGGTCCCATCATGTTCATGGTCATGGTCATGGGGAAGAAGAGAAGGTGATGACAAGGAAGCAGAAGGCAGAATCTAAAGCACAAGAAGTAGAGCATACTCCTAAAAAAGCTAAGGTGGAAAATGAAGATGGTCACACTAATGGAAAATCTGCTTCTAATGTTTTAGAAGAATATGATGACTTTTGTAAAGCCACAAATGAGCAACTATCTTTGGAGCAAATGAAAGAGATTCTTGAGGCTAATGGTCTTGATTCCTCTGGTTCTGATCTTGAAATTACTAGAAGATGCCAAGACTTGCTATTTTTTGGTGCATTAGAGAAATGCATGGTTTGCAGTGGCAATTTGGAGTTTGATGGAAGACGTTATGCTTGTAGAGGCTTTTACAGTGAGTGGTCTAGTTGCACTTTCAGCACAAGGGACCCTCCAAGGAAAGAGGAACCCATAAAACTACCAGATTCTGTTCAGGATTCTCCAGTTTCAGATTTGCTGAAGAAATATCAGGACCAGAGTAAAAGGCCTCAAAGGGATTTAGGCTTAGCTATAAAGCCTTTTACTGGAATGATGATTTCTTTGATGGGTCGTCTTAATCGAACACATGGATATTGGAAGACTACTATTGAAAAGCATGGAGGGAAAGTGGCAAACTCTATTATTGGTGCAACTTGTTTGGTTGCTTCACCTGCTGAAAGAGAACGTGGTGGAACATCTAAACTTGCAGAAGCCATGGAGAGGGGTATACCTGTGGTTAGGGAGGCTTGGTTAACTGACAGCATTGAAAAGCAAGAACCACAACCTTTGGAAGCTTATGATCTTGTATCTGATCTTTCTGTGGCTGGCAAGGGAATCCCTTGGGACAAACAAGATCATGGGGAGGAGGCTATTGAATCACTCTCAGCAGAACTCAAGCTTTATGGGAAGAGAGGGGTCTACAAAGATACCAAATTGCAGGAGCAAGGTGGAAAGATATTTGAAAAAGATGGGATACTGTACAACTGTGCCTTCTCTGTTTGTGACCAAGGGAGAAAACTTAATGACTACTGTGTCATGCAACTGATTGTTGTCCCTGAGAATCGTTTGCATCTGTATTTCAAGAAAGGAAGAGTTGGGGACGATCCAAACGCAGAGGAGCGATTAGAAGAGTGTGAGAATGATGACAATGCTATCAAAGAGTTTGTGAGGCTCTTTGAGGAAATAACAGGAAATGAGTTTGAATCATGGGAAAGAGAGAAGAAGTTTGAGAAGAAGCCATTGAAGTTTTACCCCATTGACATGGATGATGGAGTTGAAGTTAGACATGGGGCGCTAGGTCTTCGGCAGCTTGGGATAGCAGCCACACACTGTAAACTTGAGCCTATGGTTGCAAATTTTCTGAAGGTTTTGTGCAGCCAGGAGATTTATAAGTATGCATTAATGGAGATGGGTTATGACTCTCCAGACCTTCCAATAGGAATGGTTACAAATCTTCACCTGAAAAGATGTGAGGAAGTTCTGTTGGAATTCATTGAGAAAGTAAAATCATTGAAAGAGACAGGACCCAAGGCTGATGCTATTTGGTCTGATTTTAGCCAGAGATGGTTCACTCTCATGCACTCCACAAGGCCGTTCATTTTTAGAGATCACCAGGAGATTGCAGAACATGCTGCTGCAGCCCTGGAGGGTGTTAGAGATATAACCCTTGCTTCTCACCTCATAGGAGATATGACTGGTTCTACCATTGATGATCCATTATCTGACACTTACAAGAAATTAGGTTGCTCAATTTCTCCCCTAGAGAAAGATTCAGATGATTACAAGATGATTGTGAAATACCttgaaaaaacttatgaacCTGTCAAAGTTGGTGACATTGAATATGGGGTGTCAGTTGAAAACATCTTTGCTGTGGAACCAAGTGCTTGTCCTTCTTATGAAGACATAGTTAAGCTGCCAAATAAGGTTCTTCTATGGTGTGGATCACGAAGCTCAAATCTATTGAGGCACTTGCACAAGGGGTTCTTGCCAGCTATATGTTCACTACCGGTTCCTGGTTACATGTTTGGCAAAGCCATTGTTTGCTCTGATGCTGCAGCAGAAGCTGCAAGATATGGTTTTACTGCTGCAGATAGGCCAGAAGGGTTCTTGGTTTTGGCCATTGCTTCACTAGGAAATGAGATTACAGAGTTAAAAAGCCCACCTGAGGACACAACATCTTTGGAGGAAAAGAAGATTGGAGTGAAGGGGCTTGGAAAGAAGAAAACAGATGAATCAGAGCATTTTGTTTGGAAAGATGACATAAAAGTTCCTTGTGGTCGAATAATTGCCACAGAGCATGAAGATAGCCCTCTGGAATACAATGAGTATgctgtctatgatcccaagcaGGTACGCATAAGCTACTTGGTGGGGGTGAAGTATGAAGAAAAGGATGCCGTGATAGACACGGCAGAGTGA 2445 0.4147 MKVEARSHHVHGHGHGEEEKVMTRKQKAESKAQEVEHTPKKAKVENEDGHTNGKSASNVLEEYDDFCKATNEQLSLEQMKEILEANGLDSSGSDLEITRRCQDLLFFGALEKCMVCSGNLEFDGRRYACRGFYSEWSSCTFSTRDPPRKEEPIKLPDSVQDSPVSDLLKKYQDQSKRPQRDLGLAIKPFTGMMISLMGRLNRTHGYWKTTIEKHGGKVANSIIGATCLVASPAERERGGTSKLAEAMERGIPVVREAWLTDSIEKQEPQPLEAYDLVSDLSVAGKGIPWDKQDHGEEAIESLSAELKLYGKRGVYKDTKLQEQGGKIFEKDGILYNCAFSVCDQGRKLNDYCVMQLIVVPENRLHLYFKKGRVGDDPNAEERLEECENDDNAIKEFVRLFEEITGNEFESWEREKKFEKKPLKFYPIDMDDGVEVRHGALGLRQLGIAATHCKLEPMVANFLKVLCSQEIYKYALMEMGYDSPDLPIGMVTNLHLKRCEEVLLEFIEKVKSLKETGPKADAIWSDFSQRWFTLMHSTRPFIFRDHQEIAEHAAAALEGVRDITLASHLIGDMTGSTIDDPLSDTYKKLGCSISPLEKDSDDYKMIVKYLEKTYEPVKVGDIEYGVSVENIFAVEPSACPSYEDIVKLPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAADRPEGFLVLAIASLGNEITELKSPPEDTTSLEEKKIGVKGLGKKKTDESEHFVWKDDIKVPCGRIIATEHEDSPLEYNEYAVYDPKQVRISYLVGVKYEEKDAVIDTAE 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01358 814 Pfam Poly(ADP-ribose) polymerase catalytic domain 599 802 IPR012317 GO:0003950
Tsu06g01358 814 CDD BRCT_PARP1 189 264 - -
Tsu06g01358 814 ProSiteProfiles PARP catalytic domain profile. 579 810 IPR012317 GO:0003950
Tsu06g01358 814 PANTHER POLY [ADP-RIBOSE] POLYMERASE 11 806 - -
Tsu06g01358 814 ProSiteProfiles PARP alpha-helical domain profile. 451 570 IPR004102 GO:0003950
Tsu06g01358 814 PANTHER DNA LIGASE 11 806 - -
Tsu06g01358 814 Pfam Poly(ADP-ribose) polymerase, regulatory domain 452 585 IPR004102 GO:0003950
Tsu06g01358 814 Gene3D - 589 805 - -
Tsu06g01358 814 Gene3D - 109 172 IPR038650 -
Tsu06g01358 814 Gene3D - 447 588 IPR036616 GO:0003950
Tsu06g01358 814 SMART PADR1_2 97 150 IPR012982 -
Tsu06g01358 814 CDD parp_like 451 802 - -
Tsu06g01358 814 ProSiteProfiles BRCT domain profile. 184 276 IPR001357 -
Tsu06g01358 814 SUPERFAMILY ADP-ribosylation 588 806 - -
Tsu06g01358 814 Pfam PADR1 (NUC008) domain 99 149 IPR012982 -
Tsu06g01358 814 Gene3D - 23 108 - -
Tsu06g01358 814 Coils Coil 495 515 - -
Tsu06g01358 814 Pfam BRCA1 C Terminus (BRCT) domain 187 263 IPR001357 -
Tsu06g01358 814 SUPERFAMILY WGR domain-like 300 429 IPR036930 -
Tsu06g01358 814 ProSiteProfiles WGR domain profile. 324 424 IPR008893 -
Tsu06g01358 814 SMART WGR_cls 335 418 IPR008893 -
Tsu06g01358 814 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 451 587 IPR036616 GO:0003950
Tsu06g01358 814 MobiDBLite consensus disorder prediction 1 50 - -
Tsu06g01358 814 ProSiteProfiles SAP motif profile. 71 105 IPR003034 -
Tsu06g01358 814 SMART BRCT_7 186 266 IPR001357 -
Tsu06g01358 814 Gene3D BRCT domain 184 283 IPR036420 -
Tsu06g01358 814 SUPERFAMILY BRCT domain 186 288 IPR036420 -
Tsu06g01358 814 MobiDBLite consensus disorder prediction 1 54 - -
Tsu06g01358 814 Pfam WGR domain 335 413 IPR008893 -
Tsu06g01358 814 CDD WGR_PARP1_like 325 431 - -
Tsu06g01358 814 MobiDBLite consensus disorder prediction 140 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01358 Tsu-Chr6 12771841 12776098 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01358 K10798 - gmx:100788978 1458.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01358 06 12771841 12776098 Tsu06g01358 06 12771841 12776098 ECH