Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01349 ATGACAAGCTTTTCCTTCTTCACCtcacttcttttctttcttctcaccATTTCAGGTTCATTTTTGCAAATCAATGGCCTAAGTTTTGGAATAAATTATGGACAAGTAGCAAATAATCTACCTTCTCCTTCAAGAGTAGCTGTTCTTATAAGATCAATGAATGTAACAAGAATCAAACTCTATGATGCTGATTCAAATGTTCTACATGCTTTCTCTAACTCAAATGTTGAATTTGTTATAGGAATTGGAAATGAACATTTACAAAATATGACAAATCTTTCAAAAGCTCAAATTTGGATTCAACATCATGTTCTACCTTATCtttcacaaacaaaaataatttctatAAATGTAGGAAATGAAGTATTCAATAGTAATGATACTCAATTAATATCAAACCTTCTTCCTTCAATGCAAAATGTCCATAATGCCCTTGTTAATCTTGGATTAGACAAACTAATTAGTGTTACAACAGCTCATTCTTTCAATATTTTGGAAAATTCTTACCCTCCTTCATATGGTTCTTTTAAGCAAGATTTGATGCAATATATTCAACCACTTGTTGAATTTCTTGATGAAATTAATTCACCTTTTCTTATTAATGCTTATcctttttttgcttataaagaTAACCCTAATGAGGTATCTTTAAACTATGCATTATTTCAACCAAATCAAGGTTTAGTTGATCCAAATACAAACTTACATTATGATAACATGTTGTATGCACAAATTGATGCTGTTTATGCCGCAATCAAAGCGATAGGATATACGAATGTTGAAGTTAAGGTTTCTGAGACCGGTTGGCCTTCAAATGGCGATTCGAATGAAATTGGAGCTACACCTCAAAATGCAAAATTGTATAATGGAAATTTGcttagaagaattgaagaaaaacaagGAACTCCTGCAAAACCTTTGGTTCCAATTGATGTATATGTTTTTGCACTTTTTAATGAAGATTTGAAACCTGGTCCTGCTTCAGAGAGAAACTATGGACTTTATTATCCCAATGGTAGTCCAGTTTATAACATTGGATTGCAGGGTTATCTTCCACAAATGGTTGTGCCTTCCAAATCTAAGGTTTTGTCTTTCAATTTTCTTGTATGTATAGTCACAAGCTTGATTTTTACTTGGGAGCTTTCAAGATCATGA 1155 0.2978 MTSFSFFTSLLFFLLTISGSFLQINGLSFGINYGQVANNLPSPSRVAVLIRSMNVTRIKLYDADSNVLHAFSNSNVEFVIGIGNEHLQNMTNLSKAQIWIQHHVLPYLSQTKIISINVGNEVFNSNDTQLISNLLPSMQNVHNALVNLGLDKLISVTTAHSFNILENSYPPSYGSFKQDLMQYIQPLVEFLDEINSPFLINAYPFFAYKDNPNEVSLNYALFQPNQGLVDPNTNLHYDNMLYAQIDAVYAAIKAIGYTNVEVKVSETGWPSNGDSNEIGATPQNAKLYNGNLLRRIEEKQGTPAKPLVPIDVYVFALFNEDLKPGPASERNYGLYYPNGSPVYNIGLQGYLPQMVVPSKSKVLSFNFLVCIVTSLIFTWELSRS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01349 384 Pfam Glycosyl hydrolases family 17 30 345 IPR000490 GO:0004553|GO:0005975
Tsu06g01349 384 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 14 8 362 - -
Tsu06g01349 384 SUPERFAMILY (Trans)glycosidases 29 346 IPR017853 -
Tsu06g01349 384 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 8 362 IPR044965 GO:0004553|GO:0005975
Tsu06g01349 384 Gene3D Glycosidases 28 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01349 Tsu-Chr6 12690094 12692116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01349 79 379 Glycoside Hydrolase AT2G27500 62.914 2.21e-147 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01349 - - ccaj:109798347 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01349 06 12690094 12692116 Tsu06g01349 06 12690094 12692116 ECH
Tsu02g05179 02 60765899 60772111 Tsu06g01349 06 12690094 12692116 PCT