Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01346 ATGGCGGTAAGAGCCACAGTATCACGTTTCCCAATTGACACAGACGCACGCGAAGTTTCCGGCCTCTTATGGGGAGTAACCGTCGCACCTTTCGCCGCCGTAGACGAAAACGGCCAATCTCCGGTATACGGATCCAGCGGCGACCTTTTACCACGGTGCGAGAATTGTTGGGCTTACTTTAACACCTACTGCGAACTTGAACAATGGTCATGGTCTTGCTCTCTCTGTGGTAATCTCAATGGTCTCTCTTCTGATGCAATCGAACGCTATTCTCGTCCTCAATCTTGTGCTGAAATGATGTCTTCGTTTATAGATCTTGAATTGCCTCCGCAAGAATCTTCTGATGATGCTGCATTGCAAGCTTGTCCTGTTTATGTTGCTGCTGTTGACTTGTCATCTTCCGAGGAGTTTCTGGAACTCACTAAAAGTGCGTTGCTGGCAGCTATGGAAGCTCTCGCTCCTGGTTCACTTTTTGGGCTTGCTACGTTCAGCCATAAACTAGGACTTTATGATGTTCAAGGTCCAATACCTGTGGTGAAAAATGTTTTCGTCCCTCCTGATGCAGAGGGCAGCTTATCAATTGAGCTTGAAGATGTCATGCCTTTGTTACAATTTCTGGCTCCCGTGGATACTTGTAAGGACCGTATTGCATCTGCACTTGAATCACTTAGACCAACAACTTCATGGGAGAGAACCACGGGATCAGGTCAAGGAATGGAAGGTGTTCTGCTAGGTGGCCGTGGTTTTGGGGTGGCAATGGAAGCCCTCTGCAATTACCTTGGATCTGAATATGGAAACACTTTTGCATTAGCTAGAATCTTTGCGTTCTTGTCTGGTCCTCCTGATTATGGAGCTGGACAATTGGACACAAGACGATATGGCGAGCAATATGCAAGCAAAGGGGAGGATGCAGATCGTGCTCTACTCCCAGAGCAGACACCATTTTATAAAGATCTGGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCTGTAACAAATGAGTATACTGACTTGGCATCATTAAAATTTCTGAGTATTGAAAGTGGAGGctccttatttttttatacaagtaCCGAAGATTCAACTTTGCCTCAGGACATTTATCGTATGCTGAGTAGGCCATATGCTTTTGGTTGCGTCTTGCGATTAAGAACCTCAACTGAATTTAAGCCTGGAAATTCTTATGGTCACTTCTTTCCAGATCCAGAGTATGAAAATGTTCAACACGTCATATGCTGCGATTCTTATGCTACATATGCTTATGACTTTGTGTTTGAGAACAACATTGGATTTTCAAGaagtaaAGCAGACGTTCCTACACTCCAGATTGCATTCCAGTACTCAGTTGTAGTTCCTCCTCAGGAGCTTTCCAATTCAGGCGAGATCTCTACAAGCAGAACCAAGCATCATTCCCTTCAACGTCGGCTAAGGATCCGAACAGTGCAGTTTGGCGTTGCTCAGAACATTAACGAACTTTACGACAGCTGTGATCCTGAAGTTGTTCTATCGTTGCTCGTGCACAAGGTTATACTTGCCTCTTTGGAGGAAGGAGTTCGGGAGGGTAGACTTTTGCTTCAAGAATGGCTAGTGATCCTTACAGCTCAGTACAACGATACTTATAAACTTATTCAGTATGGTAATGGAAGTTCAATAAGATCTCAGCTTGATGTTGCCTTCTCTCAATGTCCTCAACTGCAGCCCCTACCACGTCTAATCTTTGCTCTCCTTCGAAACCCTCTTCTTCGCTTTCACGAAGAAGGTGTTCATCCTGACTATCGCATATATCTTCAATGCTTGTTTAGTGCGTTGGAACCGAGTTCCCTTCATCGTGCTGTGTATCCAGTATTGACTTCATATGCTACTCCAGACAAGCAAGCATATCCTCGCCATTCCTTGAGTCGTGCTGCACTGCTTACCAGTGGCAGTCCAATATTTTTCCTGGATGCGTTCACAATTCTGATTGTGTTTTATTCTTCAACTGCAGACCCAACACTTCCTTTTCCTCCACCCCATGATTGTTTGTTAAGAAATACCATCAACAAGTTGAAGAAAGAGAGATGCATCACTCCTAAACTCATTTTTATTCGAGGAGGGCAGGACGATGCCTCAATTTTCGAGAACTTTCTGATCGAAGAGCAGGATGTTGATGGAAGCGGTCTTACAAGTGTGATGGGTTTCGTTTCCTTCCTTGAAGATATAACTCAGAAAGTTTTAGAATTCATCAAATAG 2241 0.4391 MAVRATVSRFPIDTDAREVSGLLWGVTVAPFAAVDENGQSPVYGSSGDLLPRCENCWAYFNTYCELEQWSWSCSLCGNLNGLSSDAIERYSRPQSCAEMMSSFIDLELPPQESSDDAALQACPVYVAAVDLSSSEEFLELTKSALLAAMEALAPGSLFGLATFSHKLGLYDVQGPIPVVKNVFVPPDAEGSLSIELEDVMPLLQFLAPVDTCKDRIASALESLRPTTSWERTTGSGQGMEGVLLGGRGFGVAMEALCNYLGSEYGNTFALARIFAFLSGPPDYGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGSLFFYTSTEDSTLPQDIYRMLSRPYAFGCVLRLRTSTEFKPGNSYGHFFPDPEYENVQHVICCDSYATYAYDFVFENNIGFSRSKADVPTLQIAFQYSVVVPPQELSNSGEISTSRTKHHSLQRRLRIRTVQFGVAQNINELYDSCDPEVVLSLLVHKVILASLEEGVREGRLLLQEWLVILTAQYNDTYKLIQYGNGSSIRSQLDVAFSQCPQLQPLPRLIFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLHRAVYPVLTSYATPDKQAYPRHSLSRAALLTSGSPIFFLDAFTILIVFYSSTADPTLPFPPPHDCLLRNTINKLKKERCITPKLIFIRGGQDDASIFENFLIEEQDVDGSGLTSVMGFVSFLEDITQKVLEFIK 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01346 746 SUPERFAMILY beta-sandwich domain of Sec23/24 3 500 - -
Tsu06g01346 746 Pfam Sec23/Sec24 helical domain 501 613 IPR006900 GO:0006886|GO:0006888|GO:0030127
Tsu06g01346 746 SUPERFAMILY vWA-like 123 377 IPR036465 -
Tsu06g01346 746 Pfam Sec23/Sec24 trunk domain 122 373 IPR006896 GO:0006886|GO:0006888|GO:0030127
Tsu06g01346 746 Gene3D - 31 101 - -
Tsu06g01346 746 Gene3D von Willebrand factor, type A domain 122 379 IPR036465 -
Tsu06g01346 746 Gene3D Sec23/Sec24 helical domain 473 630 - -
Tsu06g01346 746 PANTHER OS05G0443300 PROTEIN 1 744 - -
Tsu06g01346 746 PANTHER SEC24-RELATED PROTEIN 1 744 - -
Tsu06g01346 746 SUPERFAMILY Zn-finger domain of Sec23/24 46 111 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Tsu06g01346 746 SUPERFAMILY Helical domain of Sec23/24 501 617 IPR036175 GO:0006886|GO:0006888|GO:0030127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01346 - - gmx:100807557 1402.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01346 06 12651501 12658016 Tsu06g01346 06 12651501 12658016 ECH