Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01329 ATGGCTATGGCGCCAAGAAAACCTCGCAACCGTGAAATTCTCTTCGACTCCGTCATCGCTCTTGTCTTCATCCTCGTCGCTTGTGTCGACCTCTGCGACGGCGCCACCGTTGTTGATGTTTACCGATTAATTCAATACGATATGTCTGGTGTTCCGTTTGGATCTCGACTTGCTAGTCTTAATCATCACGCTGCTTCTCTTCATTTCTCTCCTCATGCTGATCTCTCTCGTACTGTTCTTCTCATACCTCTTCGTGAACTCAACATGTCCTTTGTTCAAGATTATATTGTTGCTAGCAAACCTCTGGGGGGTTTAATATTTTTGCTGCCCCAGATATTTAGTTTCGAAAACAAAGGTGGCGTGGGAAGTAATCACGATGATGGGAACAAAGATCCGCTGAAGAATGTGCTGGCCGAGCTTGAACAAATACTTATACATACAAACTTACCTTATCCTGTTTATTTTGCTTTTGAGGACGACAACATTGACAATGGATGGTTGGCAGGGCTGAAGACCGATGGTGATTCTCATCAATTACCAACCATTGCTATAGTGGCATCATATGACACCTTTGGTGCTGCTCCGGCATTATCAGTGGGAAGCGATAGCAATGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCtagattgttttctcttttatatTCTAATCCAAAGACAAGAGGACAATACAATCTTCTGTTTGGGCTAACGTCTGGTGGGCCGTACAACTACAATGGAACCCGTAAGTGGCTTCAGAGCTTTGATCAACGTCTGCGTGAGAGCATTGATTATGCTATTTGCTTAGATAGTATTGGCTCATGGGAAAATGAACTGTGGATTCATGTGTCTAAGCCTCCAGAAAATGCCTTTATTAAACAAATTATGGAAGATTTTTCAAGCGTTGCAGAAGATTTAGGTTTCCAAGTTAATCTGAagcataagaaaataaatatttcaaattctcgAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACTGCTGCCACCCTATCTGAACTCTCTACAGCACCTGAATTGCTAGAAAGCACTGGTGGTTTGATTGATGGCAGGCAATTTGTCAATGAAGCGGCAATTGTGAGAAGTGTGAAATTAATTGCCGAGTCTCTTGCGAAGCATATTTATGGGCATCAAGGAAAGAACGTACAGATCTTTGCCGACAACAGTAACTTGGCTGTAAATCCTTCTTATGTTCGATCATGGTTAGATATTTTGTCGCGAACACCTCGAGTAGCACCATTTTTATCAAAAGATGATCCTTTTATTACGGCATTGAAAAAGGAATTAGAAGATCATACTGATGAAGTTCATCTTCAACGAGAAGTACTAGATGGGATGTTCACTTTCTATGATTCAACTACAGCAAAGTTGAACATATATCAGGTTGCCAGTGTCACGTTTGACTTGCTGTTGCTTCTAGTGTTGGGATCTTATTTAATTGTGCTCTTCAGTTTCTTGGTCATCACTACTAGGGGTCTTGATGATCTAATCAGTTTATTTCGGCGGCCTCCTTCTCGAAAAGACATGTCTCAAAAGTTCATGGAGATGTTCACGAAACTCCAAGTCAATGTTCCTTTTGGCGAGGCTTTTGAGCAAatattggtGAAACTTCCTCCAAAGTTGAAAGATCCAGGTAGCTTCAGTATCCCTTGTTCCATCGGTAAGCTGAATGTTGAAAGAGCACTTTGTGACTTAGGTTCTAGCATCAACTTGATGCCTCTGTCTATGGCAAGAAAGCTTAATTGTGGAGAACCAAAGCCGACTAAGATCATTACTTTAACTTTTGTTGATAGTTCAATTATTTATCTGTATGGAATTCTTGAAGATGTTTTAGTCAAAGTGGGTGATCTATTACTTCCAGCTGACTCTGTCATCTTAGACATGGATGAAGATACCGAAATTTCTTCTATTTGGAAGACCATTCTCTACAACTTTTAG 1968 0.4019 MAMAPRKPRNREILFDSVIALVFILVACVDLCDGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHADLSRTVLLIPLRELNMSFVQDYIVASKPLGGLIFLLPQIFSFENKGGVGSNHDDGNKDPLKNVLAELEQILIHTNLPYPVYFAFEDDNIDNGWLAGLKTDGDSHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTRKWLQSFDQRLRESIDYAICLDSIGSWENELWIHVSKPPENAFIKQIMEDFSSVAEDLGFQVNLKHKKINISNSRVAWEHEQFSRLRVTAATLSELSTAPELLESTGGLIDGRQFVNEAAIVRSVKLIAESLAKHIYGHQGKNVQIFADNSNLAVNPSYVRSWLDILSRTPRVAPFLSKDDPFITALKKELEDHTDEVHLQREVLDGMFTFYDSTTAKLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKDMSQKFMEMFTKLQVNVPFGEAFEQILVKLPPKLKDPGSFSIPCSIGKLNVERALCDLGSSINLMPLSMARKLNCGEPKPTKIITLTFVDSSIIYLYGILEDVLVKVGDLLLPADSVILDMDEDTEISSIWKTILYNF 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01329 655 PANTHER NICALIN 11 163 - -
Tsu06g01329 655 PANTHER NICALIN 164 517 - -
Tsu06g01329 655 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Tsu06g01329 655 Gene3D Zn peptidases 121 369 - -
Tsu06g01329 655 CDD M28_nicalin_like 137 387 - -
Tsu06g01329 655 PANTHER NICALIN 164 517 IPR016574 GO:0009966|GO:0016020
Tsu06g01329 655 Pfam Nicastrin 182 318 - -
Tsu06g01329 655 CDD retropepsin_like 559 639 - -
Tsu06g01329 655 SUPERFAMILY Zn-dependent exopeptidases 174 345 - -
Tsu06g01329 655 Gene3D Acid Proteases 537 647 IPR021109 -
Tsu06g01329 655 ProSitePatterns EF-hand calcium-binding domain. 202 214 IPR018247 -
Tsu06g01329 655 PANTHER NICALIN 11 163 IPR016574 GO:0009966|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01329 Tsu-Chr6 12533453 12544932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01329 7 517 EF-hand Containing Proteins AT3G44330 69.479 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01329 - - mtr:MTR_4g052530 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01329 06 12533453 12544932 Tsu06g01329 06 12533453 12544932 ECH