Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01312 ATGGCAACCGCTCCTTTGGTCTCTGCTGCCCTAAGAAGGCTAGAAGGAAAGGTAGCTCTGATCACCGGCGGTGCAAGCGGCATCGGTGAGGCCACTACAAGACTCTTTTCTAAGCACGGAGCTAAAGTCATAATAGCTGATATTCAAGACGACATAGGTCACTCTCTTTGTAAAGATCTACTTGAATCGCCCACCTCCTATGTCCATTGTGACGTGACAAAGGAAAAAGACGTTGAAAATGCAGTGAATGCAACAATTTCCAAGTATGGTAAACTAGATATCATGGTTAACAATGCTGGTATAGCCGGCGCAAACAGAACCAACATACTTGATTACAAGTTATCCGAATTTGAGGAAGTGATTAATGTTAACTTGGTTGGTGTCTTTCTCGGAACAAAACACGCCTCAAGGGTAATGATCCCCGCTCGACGAGGTAGCATAATTAACACAGCTAGTATTTGTGGAAGCATCGGTGGTGTAGCTTCACATGCGTACACGAGTTCAAAGCACGCCGTTGTGGGGCTGATGAAAAACACGGCCATCGAGCTTGGACCGTTTGGTATTCGAGTGAATTCTGTGTCACCTTATCTCGTTGCAACGCCGATGGTTACAAATTACTTAAAGTTAGATATTGATGATGGTGGGGTTTTACCATTTTATTCAAATCTAAAGGGTACTCATCTTGTGCCAAAAGATGTGGCCGAAGCTGCTCTATACTTGGGCAGTGATGAATCTAAGTATGTTAGTGGTCACAATCTTGTAGTAGATGGAGGATTCACAGCTGTAAACACTGGATTTTGTGTGTTTGGACAATCTGTGTAA 822 0.4367 MATAPLVSAALRRLEGKVALITGGASGIGEATTRLFSKHGAKVIIADIQDDIGHSLCKDLLESPTSYVHCDVTKEKDVENAVNATISKYGKLDIMVNNAGIAGANRTNILDYKLSEFEEVINVNLVGVFLGTKHASRVMIPARRGSIINTASICGSIGGVASHAYTSSKHAVVGLMKNTAIELGPFGIRVNSVSPYLVATPMVTNYLKLDIDDGGVLPFYSNLKGTHLVPKDVAEAALYLGSDESKYVSGHNLVVDGGFTAVNTGFCVFGQSV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01312 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Tsu06g01312 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 IPR002347 -
Tsu06g01312 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Tsu06g01312 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 262 IPR036291 -
Tsu06g01312 273 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 8 266 - -
Tsu06g01312 273 Gene3D - 6 270 - -
Tsu06g01312 273 CDD secoisolariciresinol-DH_like_SDR_c 13 260 IPR045309 GO:0016616
Tsu06g01312 273 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Tsu06g01312 273 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Tsu06g01312 273 PRINTS Glucose/ribitol dehydrogenase family signature 139 155 IPR002347 -
Tsu06g01312 273 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Tsu06g01312 273 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Tsu06g01312 273 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Tsu06g01312 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 152 180 IPR020904 GO:0016491
Tsu06g01312 273 Pfam Enoyl-(Acyl carrier protein) reductase 23 260 - -
Tsu06g01312 273 PANTHER MOMILACTONE A SYNTHASE 8 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01312 Tsu-Chr6 12397569 12399178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01312 11 259 Acyl Lipid Metabolism Gene Families AT1G24360 31.765 5.31e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01312 - - gmx:100782627 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01312 06 12397569 12399178 Tsu06g01312 06 12397569 12399178 ECH