Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01303 ATGGGTGTTCCATCGTTTTATAAATGGTTAATCAACAAATATCCAAAGGTGGTTCAAGACATAAACACCAACAACACAAACACTTTAACTGTTGAATATGATAATCTTTATTTTGACATGAATTCCATTATCCATCCATGTTTTCATCCCAATGATGATGAAAATAACAACAATATTTCTCCTCCAACAACTTTTGATCAAGTGTTTACAAATATGTTTGATTACATTGATAACCTTGTTGGCATTGTTAAGCCTCGCAAGCTACTCTACATGGCCATTGACGGAGTAGTTCCACGAGCGAAAATGAACCAACAAAGGACTAGACGTTTTAGAACGGCCAAAGACGATGAAATGCGTGAAGCCGAGGAAGAGAGACTGAGGAAGCAATTTGAAATGGAAGGAAAACAAGTTCTTCCTAAACAAGAATGTGAAGTATCAGATTCTAATGTAATAACACCAGGAACAGAATTCATGCACAAACTTTCTGAAGCTCTTAAAAGTTATATCTCTTTAAGAATATCCTCCAATTCATTATGGAAAGATATTATGGTAATTTTATCTGATGCTAATGTTCCTGGAGAAGGAGAACATAAGATTATGTCATTCATAAGGAAACAACGAGGTCTTCCTGATTACGATCCAAACACAGTTCATTGCTTATACGGCTCGGATGCTGATCTTATAATGCTTGGACTGTCAAGCCACGAGCCTCATTTTTCGATCATAAGAGAGCTTTTGCATATTTGGTTGTTGAGGGAATATCTTGAATTAGAAATGAAGATAGAAGATCCTCCGAAAAATCTCATCGTTGATTTCGAGCGGATAGTTGATGATTTTATCTTCATTTGTTTCTTTGCTGGAAATGACTTTCTTCCTCACTTGCCATCTTTGGATATTTATGAGGGTGCTATTGATTTACTTATGACTGTTTACAAGAGAGAGTTCAATAAATTTGGAGGATATCTTGTTGACATAAATAAGATGGGAGAGAAACATAATGCATATGTGAAGCTATCAAGAGTTGAAAAATTCATACTTATGGTCGGTGCATATGAAGAAAAAATCTTCAATAAAAGAAGCGCAATTAGAGGCAAGAAATTGAGAAGGCTTATTAGTGATCAAGAGCAATCAAAGCAAGAAGATCAGAATGCATTTGATTTTATGGATATTGAAAATGAAAGTAGTTCGAATTGCGCCCTTCGCATTAAAAAGGCTCATGATATCAACAATGTTTGTACTGTTTCTGATGAAGAAATTTTGAAAATCACAAAGGATTTAAAAAAGGAATTAAAAGACTGCATAAAAGAGAAAGGAGACTTATTGAAGAGTGGAGAGTTCTTGATTGACAAGataaaatatgGAACTGTTGGGTTTAAAGAGAGATATTACAAAGAGAAGTTTGCTGTGGAGGGTTCTACCAACATTGAGCTAAAAAGGAAagaaataGTGCAGAAGTACACTGAGGGTTTGCTGTGGGttcttcaatattatttttcaggAGTTGCGTCATGGACATGGTTTTATCCCTATCATTATGGTCCATTTGCTTCAGACTTAAAAGGCATGGGTCAAGTGAAAGTAAATTTTGAAAAAGGTGTCCCATTCTTACCTTTTGATCAGCTCTTAAGTGTTCTCCCGCAGAGGAGTTCGTATGCACTTCCAAAAGCATATGCACAGCTGATGCTGGATGAGGAGTCTAAAATATTTGACTTGTTTCCTCAGAaTTTTGAAATTGACATAGAAGGAAAGCGCTTCAAGTGGCAGgGTATATGCAAACTTCCATATATGGATGAAAAGAGGCTTTTGGCTGAAACCAGAGAACTCGTGAAAGGATTAACTGAGAATGAAGCAAAAAGAAATTCGGTCGAAGTAGATAGGTTATTAGTTAGCAACACTGCCAAGGTAGCAGAAAAAATTTGCTCACTAAGTTCAAACAAATTAGATACAAGCATAAGCAGTGATGGCATTGGCGGCATCATAAGTCTTTGCCATGAGGATGTTGAGAAAAACCGACAAGAAGATTTAGTCTTCTGTGTCAAATATGAGATGCCGGTGAATGGTTCAGGTCATATTCAGCATCTACTATGTGGTGTAAATTTTCCTGAAAAGACAATCTTTGAAAATGACATAGAGGAAACGGTTCTATGGCATGAACATCGACAATATCATAACCGTTTTGAGAGGTCGAATAATCAAGACAATTGGAGAAGTTCAAATAGAGAGGGCAATAATTCAAAGTTTCCTCCTAATTCATCTACTTTTGGTGGAAGAAGCTATGGACATCCTGATTCGATTCACAAAGGTGCTGGTGATGGATGGGGTTCCGGTAGAGGCAAACCAGAAAGGATTGATCATGACATTCTTAATGAAAGAATGTCGACGTTTACTCCTTTCCGTAAACAACCTAATGATTATGGGGGATCTTCTTATCAACAACGTTCGAATGCGCCTTTTGGTAGAGGACGAGGCAGGGGTCAACAGAATTCGAACAATGTGTATTCAAGGAAGAGTGTTTCATCTAATTCAAACAACTCGTTACGGCCTCAATGGACTGAATCAAAGGATAAAAGCCGCTGGTAG 2580 0.3667 MGVPSFYKWLINKYPKVVQDINTNNTNTLTVEYDNLYFDMNSIIHPCFHPNDDENNNNISPPTTFDQVFTNMFDYIDNLVGIVKPRKLLYMAIDGVVPRAKMNQQRTRRFRTAKDDEMREAEEERLRKQFEMEGKQVLPKQECEVSDSNVITPGTEFMHKLSEALKSYISLRISSNSLWKDIMVILSDANVPGEGEHKIMSFIRKQRGLPDYDPNTVHCLYGSDADLIMLGLSSHEPHFSIIRELLHIWLLREYLELEMKIEDPPKNLIVDFERIVDDFIFICFFAGNDFLPHLPSLDIYEGAIDLLMTVYKREFNKFGGYLVDINKMGEKHNAYVKLSRVEKFILMVGAYEEKIFNKRSAIRGKKLRRLISDQEQSKQEDQNAFDFMDIENESSSNCALRIKKAHDINNVCTVSDEEILKITKDLKKELKDCIKEKGDLLKSGEFLIDKIKYGTVGFKERYYKEKFAVEGSTNIELKRKEIVQKYTEGLLWVLQYYFSGVASWTWFYPYHYGPFASDLKGMGQVKVNFEKGVPFLPFDQLLSVLPQRSSYALPKAYAQLMLDEESKIFDLFPQNFEIDIEGKRFKWQGICKLPYMDEKRLLAETRELVKGLTENEAKRNSVEVDRLLVSNTAKVAEKICSLSSNKLDTSISSDGIGGIISLCHEDVEKNRQEDLVFCVKYEMPVNGSGHIQHLLCGVNFPEKTIFENDIEETVLWHEHRQYHNRFERSNNQDNWRSSNREGNNSKFPPNSSTFGGRSYGHPDSIHKGAGDGWGSGRGKPERIDHDILNERMSTFTPFRKQPNDYGGSSYQQRSNAPFGRGRGRGQQNSNNVYSRKSVSSNSNNSLRPQWTESKDKSRW 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01303 859 PANTHER OS11G0157000 PROTEIN 1 753 - -
Tsu06g01303 859 MobiDBLite consensus disorder prediction 731 758 - -
Tsu06g01303 859 Pfam XRN 5'-3' exonuclease N-terminus 1 244 IPR004859 GO:0003676|GO:0004527
Tsu06g01303 859 MobiDBLite consensus disorder prediction 730 859 - -
Tsu06g01303 859 Pfam Xrn1 helical domain 270 710 IPR041412 -
Tsu06g01303 859 Gene3D - 1 137 - -
Tsu06g01303 859 Gene3D - 141 301 - -
Tsu06g01303 859 MobiDBLite consensus disorder prediction 794 850 - -
Tsu06g01303 859 Gene3D - 522 622 - -
Tsu06g01303 859 PIRSF Exonuclease_Xrn2 1 246 IPR017151 GO:0004534|GO:0005634|GO:0006139
Tsu06g01303 859 PIRSF Exonuclease_Xrn2 244 858 IPR017151 GO:0004534|GO:0005634|GO:0006139
Tsu06g01303 859 CDD PIN_XRN1-2-like 36 255 - -
Tsu06g01303 859 PANTHER 5'->3' EXORIBONUCLEASE 1 753 IPR027073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01303 Tsu-Chr6 12282894 12299575 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01303 - - cam:101491694 1282.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01303 06 12282894 12299575 Tsu06g01303 06 12282894 12299575 ECH