Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01300 ATGGTGCACCCTTCTACTAAAAATATCCCATCAAGAAGTTCTTCTGATACCGGCTTTGTCCGGCGTCTAACTTTGACAGTGGTATCCATCTTTGTCATTTTAATGGCTGTTATTGGTATAGCTTGGTTTGTCATGCATCCACACGACCCTAGTTTTTCCGTAACATCACTTTCTGTCTCGAACTTCACTGTAACTGATTCACAGATTACATGCAAGTATGAGGTTAGATTGACCGTAACAAATCCAAACAAGAAAATCCAATTGATTCTCGACGATTTCAACGTGGTAATACTTTACAGTGACGTTGTGCTCTCGATGGCCGAGGTGGAACCACCTATACTTTTGGCGAGGATGAGCAATAAGAGTGTGAATGTTGACTTGGTAATGAAGAATTCAGTAAAGTTGGTACAAGAGAATCTAGTTAAAGAATGGAACAAAGAAATGGTGAATTTTTATGTTAAGATGGTTGTTGGAGTTAGATTTGAAGCTGGAATATGGCCAAGCAAGGAAAAAATATTGTGTGTTTATTGTGAGGATTTGGATGTGGAATTCTATTCTCCAAAAGATACTGGAAAACTTTTGGGAATAGAGAAGAATTGTCACATAGTTGATGCCAAACCATAG 624 0.383 MVHPSTKNIPSRSSSDTGFVRRLTLTVVSIFVILMAVIGIAWFVMHPHDPSFSVTSLSVSNFTVTDSQITCKYEVRLTVTNPNKKIQLILDDFNVVILYSDVVLSMAEVEPPILLARMSNKSVNVDLVMKNSVKLVQENLVKEWNKEMVNFYVKMVVGVRFEAGIWPSKEKILCVYCEDLDVEFYSPKDTGKLLGIEKNCHIVDAKP 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01300 207 Pfam Late embryogenesis abundant protein 76 165 IPR004864 -
Tsu06g01300 207 PANTHER HARPIN-INDUCED 1 2 200 - -
Tsu06g01300 207 Gene3D - 37 170 - -
Tsu06g01300 207 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 2 200 - -
Tsu06g01300 207 SUPERFAMILY LEA14-like 32 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01300 Tsu-Chr6 12266316 12266939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01300 11 164 EF-hand Containing Proteins AT5G21130 25.767 5.48e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01300 - - adu:107477673 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01300 06 12266316 12266939 Tsu06g01300 06 12266316 12266939 ECH