Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01296 ATGGTGGAACCATCTTTTGCAGAAAGGACAGTGATTAACCATAGAGAGTATTTCACAAAAGGTGACCTTATTGTATCAACTGCCATCAACATAACTGAATCTGAAGTCTTCACTGCTGATGGCCGTAAAATTGCCTATGATTATCTCGTTATTGCCACCGGTCACACAGATCCTATCCCGAAAACAAGGACCGAAAGACTTGACCAATACAAAGGAGAAAATACAAAGATAAAATCCGCACGTTCAATTTTAATTGTTGGAGGAGGACCAACCGGTGTCGAGCTAGCAGCCGAGATAGCTGTTGATTTTCCTGACAAAAAAGTGACAATAGTACATAAAGGATCAAGATTGCTAGAATATATCGGAGCGAAAGCTTCAAGAAAGACTTTAAAATGGCTTAAATCAAGGAAAGTTGATGTGAAACTAGATCAATCAGTTGACATAGATTCATTCACAAATGAGACTTATCAAACTTCAGCTGGAGAGAGTATAGAAGCAGATGCACATTTTGTATGTATAGGTAAACCACTTAGTACAACATGGCTCGGAGAAACGTTTTTGAAAGACGATTTGGATGGTAATGGAAGGGTTCAAGTTGATGAATACTTAAGAGTTAAGGGTAGAAGCAATGTTTTTGCAATTGGAGATATTACAGATATTCAAGAAATAAAACAAGGAGTCTATGCACAAGGCCATGCTAAATTAGTAGCGAAGAATCTAAAGCTATTGATCGAAGGAGGAGCGAAAGAACCTAAATTAGGAACTTACAAGGCACAAGCACCAATATCTATTGTTTCGCTCGGACGAAAACATGGAGTTGCACAGTTCCCTTTCATGACAGTTATCGGAAGGTTTCCCGGTATTATCAAATCAGGAGATTTGTTTGTtggaaaaacaagaaaagaattaGGACTTGAACCTAATGctaaaaaatcttaa 939 0.3706 MVEPSFAERTVINHREYFTKGDLIVSTAINITESEVFTADGRKIAYDYLVIATGHTDPIPKTRTERLDQYKGENTKIKSARSILIVGGGPTGVELAAEIAVDFPDKKVTIVHKGSRLLEYIGAKASRKTLKWLKSRKVDVKLDQSVDIDSFTNETYQTSAGESIEADAHFVCIGKPLSTTWLGETFLKDDLDGNGRVQVDEYLRVKGRSNVFAIGDITDIQEIKQGVYAQGHAKLVAKNLKLLIEGGAKEPKLGTYKAQAPISIVSLGRKHGVAQFPFMTVIGRFPGIIKSGDLFVGKTRKELGLEPNAKKS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01296 312 PRINTS FAD-dependent pyridine nucleotide reductase signature 196 218 - -
Tsu06g01296 312 PRINTS FAD-dependent pyridine nucleotide reductase signature 82 100 - -
Tsu06g01296 312 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 182 - -
Tsu06g01296 312 Pfam Pyridine nucleotide-disulphide oxidoreductase 35 232 IPR023753 GO:0016491
Tsu06g01296 312 ProSitePatterns EF-hand calcium-binding domain. 190 202 IPR018247 -
Tsu06g01296 312 PANTHER APOPTOSIS-INDUCING FACTOR 1 1 312 - -
Tsu06g01296 312 Gene3D - 4 298 - -
Tsu06g01296 312 SUPERFAMILY FAD/NAD(P)-binding domain 83 241 IPR036188 -
Tsu06g01296 312 PANTHER NADH:UBIQUINONE REDUCTASE (NON-ELECTROGENIC)-RELATED 1 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01296 Tsu-Chr6 12239985 12242954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01296 83 224 EF-hand Containing Proteins AT4G28220 27.564 9.98e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01296 K22745 - gmx:100817682 504.982