Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01279 ATGTCCTCAAAGAAATGGTTTCCTCAAAATGGAAACTCCAACTCCATCAAAAAGAATTCATCATCTGAAAACCTCTTTCAGCTGCACCCGAACAACTCATTTTCGTCCTCGGATGAAGATGATGAGTTCAAAGAAACTAAGATGGCTGATGAAGTTGAAGATGAAGCTGAGAGAGAAAGGCTTGAGATTTGGAGTTCAAttcaaaagaacaaaaaagaaGAGCAACAAAAAAGTGGGTCATTTGATACTTGGAGTTCACTCATGTCTTTGAAGACTAAGGATGAAATCTCGAAATCTCTTCCACCATACATTCATCCTCTCGCGAAAAGGACGAAAAGCTCTTTGTCTAGGAAGAGCCTTGAAATTTGTACCGAGAGTCTCGGATCTGAGACTGGTTCAGATGGATTGGTGTTCTCTTATCCTCCATCTGAGAGTCCTGGATCCGAGACTAGTTCTGATGGATTGATGTCTTCTTATCCTCTTTCTGAGATAGAGGATACAAAAGAAACAGaacaagaagagaaaaaagttgatgaagatgaagaagaagaaaaggaagaagtGTTGGAAGTGACAAGGTTCAATTATGGTAGTGTTGTCGCTACTACTAAGAAGTCGCCACCACGATCCTTCCCACCACCACTTCCTTCGCTCTCTCGCCAAGATGGTCCATCTCTTCACATGAGGCCACACCGCGACAACGGAAGGTTGGTTTTAGAAGCTGTATCTCTTCCTTCATTGAACAACTTCTCTGTTCAACGCCAAGACGGACGACTTGTCCTCACTTTCGCCAATCAAAATGAAGAAGTTGATGAGAATGATGAGAAAGAAAATGATGGGATAGGTGAGATGGAGGAAGAGTTTGAAGGGTttgatgaagaaaaagatgaaaatgaatatgaagatgaagttgaagaagatgaagaatatgagAGTGTGATAGACAAAGGGTCATTAATGTCTTTCGAGAAAACTACTGTTAAAAGTAGTGTTCAATGGATAGGATCTAAGAATAGCAATAACAACATGGTGAATAAGCAAATTGGGCTGGTGAATAGAAATCCAATGTGGTCAAAGAAGTTCAATAATGAAGTGGATAACAAAAACTTTGAAGACAAAGATGTTCAAATGGTTGAAGCTAGTCAAATGGTAAAATCACTTCCACCAAGGCCAAGAGTTGCAAGATTGATTCCATCAGCACCAAATGCAGCAACTGGTTCTTTCAACTTAAATTCTTATGAACATTATTGGAGGACCACAAAACCAACATCAACAAAAGGTGCTAATTATCCACTTAGCCATTATCAAGAGAATTATCAAGAGAACAACAATAATAAGAATAAGATTGTTGTGTCTACAACAGGAGAGATGAAGAACATGAACAAAAACTCAAATGAAAGGCAACAAGTTTTGGTTCTCAAAGGAAAGAATGGTGATTACTTAGTTCATAATTTGAAGAGTTGCAAAGATTCAAGAAGGTCTTTTCTCTTTTGGGAACCATATTGCATTGCTACTTCATGA 1521 0.3603 MSSKKWFPQNGNSNSIKKNSSSENLFQLHPNNSFSSSDEDDEFKETKMADEVEDEAERERLEIWSSIQKNKKEEQQKSGSFDTWSSLMSLKTKDEISKSLPPYIHPLAKRTKSSLSRKSLEICTESLGSETGSDGLVFSYPPSESPGSETSSDGLMSSYPLSEIEDTKETEQEEKKVDEDEEEEKEEVLEVTRFNYGSVVATTKKSPPRSFPPPLPSLSRQDGPSLHMRPHRDNGRLVLEAVSLPSLNNFSVQRQDGRLVLTFANQNEEVDENDEKENDGIGEMEEEFEGFDEEKDENEYEDEVEEDEEYESVIDKGSLMSFEKTTVKSSVQWIGSKNSNNNMVNKQIGLVNRNPMWSKKFNNEVDNKNFEDKDVQMVEASQMVKSLPPRPRVARLIPSAPNAATGSFNLNSYEHYWRTTKPTSTKGANYPLSHYQENYQENNNNKNKIVVSTTGEMKNMNKNSNERQQVLVLKGKNGDYLVHNLKSCKDSRRSFLFWEPYCIATS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01279 506 Pfam Fantastic Four meristem regulator 210 263 IPR046431 -
Tsu06g01279 506 Coils Coil 161 187 - -
Tsu06g01279 506 MobiDBLite consensus disorder prediction 126 158 - -
Tsu06g01279 506 MobiDBLite consensus disorder prediction 35 60 - -
Tsu06g01279 506 PANTHER PROTEIN FAF-LIKE, CHLOROPLASTIC 144 505 - -
Tsu06g01279 506 PANTHER FANTASTIC FOUR-LIKE PROTEIN (DUF3049) 144 505 IPR021410 -
Tsu06g01279 506 PANTHER FANTASTIC FOUR-LIKE PROTEIN (DUF3049) 1 145 IPR021410 -
Tsu06g01279 506 PANTHER PROTEIN FAF-LIKE, CHLOROPLASTIC 1 145 - -
Tsu06g01279 506 MobiDBLite consensus disorder prediction 126 231 - -
Tsu06g01279 506 MobiDBLite consensus disorder prediction 1 60 - -
Tsu06g01279 506 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01279 Tsu-Chr6 12042273 12043793 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01279 - - aprc:113858041 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01279 06 12042273 12043793 Tsu06g01279 06 12042273 12043793 ECH
Tsu02g04771 02 56864735 56865814 Tsu06g01279 06 12042273 12043793 PCT