Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01274 atggggAAGAATCAAAAGACAGAGCTAGGAAGAGCCCTTGTGAAACAACACAATCAAATGATTCAACAAACAAAGGAAAAAGGTAGAATCTATAAGAAAAAGTTTCTAGAATCATTCACCGAAGTTTCCGATATCGATGCTATAATCGAACAAGCTGATGAAGATCATGAACAAGAACTCATTGATCTTCCTCTTCCTCCTCCAACTTCTCGTATTAATCTGGATGATGAGTCTGGTAGTGGTTTTAATGGTTTGACGGCTGAAGAAATTAAGAAGGAGCAGAAGATTGAAGAGGCGTTGCATGCTAGTAGTCTTCGAGTACCGCGCAgGCCATCATGGAGTGCTGAAATGTCTGCTGACGAGCTTCATGCCAATGAAACACAACATTTCTTAACGTGGCGTCGTAGCCTAGCCAGACTTGAGGAAAATAAGAAGCTTGTCCTTACTCCATTTGAGAAAAATCTTGATATCTGGAGACAACTCTGGCGGGTTGTTGAGCGCAGTGATTTGCTTGTTATGGTTGTTGATTCACGAGATCCACTGTTCTATCGCTGTCCTGACCTTGAGGCTTATGCAAAGGAGGTTGACGTGCACAAACGCACTTTGCTTTTGGTCAACAAGGCAGATCTTTTACCAGCTTCTGTCAGGGAGAAATGGGCAGAATACTTTCGTGCTCATGATATTCTCTTTATCTTCTGGTCAGCTAAAGCTGCTACTGCAGTTTTGGAAGGCAAAAAGCTCGGTTCATCACAGGCTGATAACATGGTGAGTGCTAATAACCCAGACACGAAGATCTATGGAAGGGATGAGCTCTTAGCTCGTTTGCAATCAGAGGCAGAAGCTATAGTAGAAATGAGAAGAAATTCTGATTCCTCGAGTGAAAATGCTTCTGTTAGTTCATCATCGAGTCATGTAGTTGTGGGATTTGTTGGATATCCTAATGTAGGGAAAAGTTCAACTATCAACGCGCTGGTTGGGCAAAAAAAAACTGGTGTCACCTCTACCCCAGGAAAAACAAAGCACTTTCAGACATTAATTATTTCTGAAAAGCTAACCCTTTGTGACTGTCCCGGATTAGTTTTTCCATCTTTTTCAAGCTCAAGATATGAGATGATTACTTGTGGGGTGTTGCCAATTGATAGAATGACTGAACACAGGGAGTGTGTCCAAGTTGTCGCCAATAGAGTCCCTAGGCATGTCATAGAAGAGGTCTATAAGATCAGTCTTCCTAAACCCAAGTCATATGAATCCCAAACCCGCCCCCCTCTAGCATCTGAACTTTTGAGAACATATTGTGCTTCTCGTGGGCAATCTACTTCTAGTGGACTGCCTGATGAAACAAGAGCTTCTCGTCAGATACTGAAAGATTACATTGATGGAAAGCTGCCTCACTATGCGATGCCCCCTGACGTGTCAGATGTGGAATTATCATCAGAAGATCTCAATGGACACGACCAAGTTAATTTGAATGTGTCAGATTCATCTGATATTGAAGATTCTTCAATTGCTGAGACTGAACATGCACCAAAACTTGAACATGTATTGGACGACCTTAGTTCATTTGACATTGCTAATGGACTTGCTTCAAACAAAGCTGCGGCTAAGAAGTCCAAGGAATCTCATAAACACCATAAAAAGCCGCAGAGGACAAAAGATCGTTCATGGAGAGCAGGGAAAGCAGTGAAAGATGATAGCGATGGGATGCCAATTGCAAGATTTCATCAGAAACCAATAAATGCAGGTCCTCTGAAAGTTTGA 1758 0.4192 MGKNQKTELGRALVKQHNQMIQQTKEKGRIYKKKFLESFTEVSDIDAIIEQADEDHEQELIDLPLPPPTSRINLDDESGSGFNGLTAEEIKKEQKIEEALHASSLRVPRRPSWSAEMSADELHANETQHFLTWRRSLARLEENKKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDSRDPLFYRCPDLEAYAKEVDVHKRTLLLVNKADLLPASVREKWAEYFRAHDILFIFWSAKAATAVLEGKKLGSSQADNMVSANNPDTKIYGRDELLARLQSEAEAIVEMRRNSDSSSENASVSSSSSHVVVGFVGYPNVGKSSTINALVGQKKTGVTSTPGKTKHFQTLIISEKLTLCDCPGLVFPSFSSSRYEMITCGVLPIDRMTEHRECVQVVANRVPRHVIEEVYKISLPKPKSYESQTRPPLASELLRTYCASRGQSTSSGLPDETRASRQILKDYIDGKLPHYAMPPDVSDVELSSEDLNGHDQVNLNVSDSSDIEDSSIAETEHAPKLEHVLDDLSSFDIANGLASNKAAAKKSKESHKHHKKPQRTKDRSWRAGKAVKDDSDGMPIARFHQKPINAGPLKV 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01274 585 Gene3D - 157 363 IPR027417 -
Tsu06g01274 585 MobiDBLite consensus disorder prediction 553 570 - -
Tsu06g01274 585 PANTHER LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED 1 549 IPR043358 GO:0003924
Tsu06g01274 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 415 IPR027417 -
Tsu06g01274 585 Coils Coil 268 288 - -
Tsu06g01274 585 Pfam 50S ribosome-binding GTPase 307 365 IPR006073 GO:0005525
Tsu06g01274 585 MobiDBLite consensus disorder prediction 536 552 - -
Tsu06g01274 585 CDD HSR1_MMR1 157 362 - -
Tsu06g01274 585 PANTHER GTPASE LSG1-1 1 549 - -
Tsu06g01274 585 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 158 362 IPR030378 GO:0005525
Tsu06g01274 585 PRINTS GTP1/OBG GTP-binding protein family signature 307 327 IPR006073 GO:0005525
Tsu06g01274 585 PRINTS GTP1/OBG GTP-binding protein family signature 353 368 IPR006073 GO:0005525
Tsu06g01274 585 MobiDBLite consensus disorder prediction 530 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01274 Tsu-Chr6 11969409 11973798 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01274 K14539 - gmx:100817523 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01274 06 11969409 11973798 Tsu06g01274 06 11969409 11973798 ECH