Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01230 ATGGTCATATATCTCTCTCCTTCTCCACCTTCACATTCAACTTCCATaatcaaattatcatccaattCAAAGAGACCCATTTCAGATTCTTCAATAAGACTCAAAACCCATTTCTCAAAATCACTTCTTTCTCCTTCATTCACTTCCTCAAATGTGAAACTCACCACCAAGAAACACTTTTTacatgataaaagaaaaagagttgACTTTAGAACTTGTGCTATTGGTGGATTTGATTATGGTAGCTTTGAAGGTCCTCAGTCTGTTCTTGAAGCTGCTGCTGTGTTAACAGCTATCATTGTTGTTCATGAAAGTGGTCACTTTCTTGCTGCTTCTCTTCAAGGAATTCATGTGAGTAAATTTGCTGTTGGATTTGGTCCAATTTTAGCTAAGTTTAATGCAAAAAATGTTGAATATTCTATTAGAGCTTTTCCACTTGGTGGATTTGTAGGGTTCCCTGATAATGATCCAGATAGTGATATACCTGTTGATGATGTAAATTTGCTTAAGAATAGACCAATTTTAGATAGAATCATTGTTGTTTCAGCTGGTGTTATTGCAAATGTTATTTTTGCATTAGTTATTATATTTGTTCAAGTCATTGCTGTTGGTTTACCTGTTCAAGAAATTTTTCCTGGTGTTAATGTACCGGAGGTTCGACCTTTTTCGGCCGCTTCTCGTGATGGATTGCTTTCGGGGGATGTGATTCTTGAAGTTAATGGAAATAAGTTTCTTAAACCTGGTCCTAATTCTGTTTCTGAAGTTGTTGATGCAATTAAGAGTAATCCCAAGAAATATGTTTTGCTTAAGGTTAAGAGAGGGGGACAGGACTTCGATATTAGGGTTACGCCGGATGAGAATTTCGATGGAACTGGTAAAATTGGAGTTCAGTTAGCTCCGAATATTAAGTTATCTAAGGTTAGACCAAAAAATGTAGTGGAAGCTGTGACCTATACTGCAAAAGAGTTTTGGGGTTTATCGTCGAATGTTTTTGATGGGTTAAAGCAGAcatttttaaacttttctcaGTCAGCTAGTAAGGTTTCAGGTCCGGTTGCTATTATTGCTGTGGGCGCTGAAGTTGCGCGGTCGAATATTGATGGTCTCTACCAATTCGCAGCCATACTCAATATTAACCTTGCAATTATAAACCTTCTTCCTTTACCGGCTTTGGATGGAGGAACATTGGCGTTGATTCTCGTTGAGGCTGCTAGAGGTGGGAGAAAGTTACCTCTTGAAGTGGAGCAACGGATCATGTCATCGGGAGTTATGCTTGTTTTGATTCTTGGATTATATCTTATTATTCGTGATACTCTTAACCTTGATTTTTTCAAGGAAATATTGTAA 1347 0.363 MVIYLSPSPPSHSTSIIKLSSNSKRPISDSSIRLKTHFSKSLLSPSFTSSNVKLTTKKHFLHDKRKRVDFRTCAIGGFDYGSFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPDSDIPVDDVNLLKNRPILDRIIVVSAGVIANVIFALVIIFVQVIAVGLPVQEIFPGVNVPEVRPFSAASRDGLLSGDVILEVNGNKFLKPGPNSVSEVVDAIKSNPKKYVLLKVKRGGQDFDIRVTPDENFDGTGKIGVQLAPNIKLSKVRPKNVVEAVTYTAKEFWGLSSNVFDGLKQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAIINLLPLPALDGGTLALILVEAARGGRKLPLEVEQRIMSSGVMLVLILGLYLIIRDTLNLDFFKEIL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01230 448 CDD PDZ_metalloprotease 201 284 - -
Tsu06g01230 448 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 25 448 IPR004387 GO:0004222|GO:0006508|GO:0016021
Tsu06g01230 448 Pfam PDZ domain 218 273 IPR041489 -
Tsu06g01230 448 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 25 448 - -
Tsu06g01230 448 SMART pdz_new 201 275 IPR001478 GO:0005515
Tsu06g01230 448 ProSiteProfiles PDZ domain profile. 203 274 IPR001478 GO:0005515
Tsu06g01230 448 Pfam Peptidase family M50 93 429 IPR008915 GO:0004222|GO:0006508
Tsu06g01230 448 Gene3D - 206 299 IPR036034 GO:0005515
Tsu06g01230 448 CDD S2P-M50_PDZ_RseP-like 89 440 - -
Tsu06g01230 448 SUPERFAMILY PDZ domain-like 173 276 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01230 - - lang:109351773 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01230 06 11478787 11480713 Tsu06g01230 06 11478787 11480713 ECH