Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01228 ATGGCTAAGAGCTCATTCAAGACAGAACACCCCCTTGAAAAGAGGCAGACTGAAGCAGCTCGCATAAGAGAGAAGTATCCTGATAGAATTCCAATAATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGATaagaaaaaGTATCTTGTTCCTGCTGATTTGACTGTTGGGCAGTTTGTGTATGTGGTGCGGAAGAGAATCAAGCTAAGTCCGGAGAAGGCCATCTTCATTTTTGTCAAGAACATTTTACCACCAACTGCGGCTATGATGTCTGCAATTTATGAAGAAAATAAGGATGAAGATGGATTTCTATACATGACTTACAGTGGGGAGAACACATTTGGAATGATGATCTGA 363 0.4022 MAKSSFKTEHPLEKRQTEAARIREKYPDRIPIIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGMMI 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01228 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Tsu06g01228 120 MobiDBLite consensus disorder prediction 1 20 - -
Tsu06g01228 120 Gene3D - 1 118 - -
Tsu06g01228 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Tsu06g01228 120 CDD Ubl_ATG8 12 114 - -
Tsu06g01228 120 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Tsu06g01228 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01228 Tsu-Chr6 11469335 11472672 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01228 K08341 - gmx:100301895 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01228 06 11469335 11472672 Tsu06g01228 06 11469335 11472672 ECH
Tsu06g01228 06 11469335 11472672 Tsu08g03552 08 53531293 53533567 ECH