Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01224 ATGAATAACGAACACAAAACGCGCGTGGCATTCACGATCGCCACCATAACAACTGCTGCCATAATCTCCATCATATTCACCGTTCGCTGCCGTACGCGGCGGAAACAGCTCAAATCCTCTTCGACTTCATGCTACTCACATTCCGAACAGAAGCCACAGTCTACATTTAAGCGAGTGTTAGCTGATAACTCCTACGCGCCGTTCAAGCACTTGAGCTTCAACGCTTCCGGTAGTAATGATGAGAAAGGTTCAAATGTGCATCCTTTTGAGAAAGAGATTACGGCATTGTTAACAAATCATCAGCCTGAAATTGAACTTGGTGCTAAGAAATTAGAAATGAATGATTCGTATGTTTGGGTTGATACCGAGATGCAGTTAAAGGAACTGGTTGATGTATTGAGCAAGGAAAGGTTCTTTGGTGTGGACACAGAACAACATGGCTTGCGATCTTTTCTTGGATTTACGGGATTAGTTCAGATTTCTACACAACAGGAAGATTATTTGATCGACACAATTGCTTTGCATGATTCTATGGAAATTCTTCGCCCAGTTTTTGCTAATCCTTCAATTTGTAAAGTATTTCATGGGGCCGACAATGATGTTCTCTGGCTACAGAGGGACTTCCATATATACATTGTTAATCTATTTGATACTTCAAAGGCATGTGAGGTGCTATCAAAACCACAGAAATCACTTGCTTATTTGCTAGAAACTTACTGTGGTGTgacaacaaataaattattacaGCGTGAAGACTGGAGACAGCGTCCTCTCTCAGCAGAAATGGTTCAATATGCACGGACAGATGCACACTATCTGTTGTATATTGCAAACTGTCTGATCATTGAACTCAAACAACTAGACAATGAAAACTCTTGTTCCGATGACAAATTCCATTTTGTTCTCGAGGCTAGTCGGCGTTCAAACATGATTTGTTTACAACTTTTCACAAAGGAGATTGAAGCTTCACCTGGAGAATCTGCTGCATTATCGTTATATTCACGTCATCAGAGTAATCAAGGCTCTCCTTCAATTTCCAATGAAACTCAGTTTCTGGATACTGTGAGGCAGCTGTGCACATGGAGAGATTTAATGGCTCGTATTCATGACGAGAGCTTAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCTTCCAGCAAGTCACTCTGAAATATACAATACCATAGTTCAAACCGATGTCAATGCAGAAACGGGTCCGAGCTCTTTCATCCCTTCCCCATCTCCTGTTGTTTGTAGCCACTTGAGTGATATCTCTCAACTGCTTGCAAACGAGTTGGTTAAACATGGTGATATTTATTCAGTGATTCTTCATAAGTGTTTAGGTCAAAACGGAAGTTGTAAACTTAACATTTTCAATTATGCTTTGTTGGTTAATAGTAACCTGAGACCTACTTTATCCAATAAACACTCAAGCCTAAAAAATCCTAGACAACATTCTCGGAAGGCTTCACgaaatttgtttgttaaaaaattctcttGCAAATCACCTGTTTATCACAATTGTCGGATATTTGCTAATGACGGGAGACTGCTTTGTTATTGTGACCGGAAGAAGCTTGAATGGTACCTTAGTCGGGATCTTGCAAAACTTGTTGATGAGGAACCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGCCACCCAGAGGATGAAGGAAATGATTTTTATATCcagagtaaaaaaaatatatgtgttGGATGTGGTGAAGGAAATCACTACTTACGATATCGAATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTAAAGAGTCATCGCTCTCATGATATTGTCCTACTTTGTGTGGATTGTCATGAAGCTGCCCATGCTGCTGCCGAGAAGTATAAGAGAAAAGTAGCTTCTGAATTTGGGATTCCTCTCTATGTTCGTAGGGTAATTCATCCAGGGCAAGAGACTGAAAAACTGAACGATGAGGGAGGTGTATCTCCATTACAATTACGATCTGCTGCTGTGGCTCTTCTACGTCATGGACCAAGAATGCCTCTTAATCGGCGTGAAGAACTGACTGAGattGTGAAGAGATATTATGGAGGAAGGGAGATATCTGAGGAAGATCTGGAAAGTGCTTTGCAAGTTGGGATGCGTCctaaagagagaagaagatatGAGAAAAAGAGAGGGGTGTCATTTAAACATTCCACTGGAAATGCTGCTGCAATGCCAGAGGGGGAAAATCATGCTGATTGTGCACCTAGAATGAGTAATGTCGACACGTTGAATGTTAATACTCTTGATGGTTCATATGCAAATGAAGAAACAAGAAGTGGAGATAATAGACAAGATGATTCGGGAGAACCCTCTTTTGTTTCTGATCTTGCAGTTGATAAAGCTAattcaaatggaaataccaTGTTAATTAAAACtacagatgatgatgatgacaatGACAGCGATGATGAAGCTGTAAATGTTGATGAGAATCTGAATAAAAGACAACCAAATGTTGTTAGCGACTTAACTGATTCCAGAGATGAAGattcaacacaaacaaaacatcATTCGAAACTATCACTTTTGGGACATGGTCCACATGGGAAACAAGTTGTAGATCATTTACTGAAGGAATATGGTGAAGATGGCGTTCGAGAGTTTTGTCAAAGATGGAGACAAGTATTTGTGGATGCTTTAAAACCACGTTTTCTTCCTGGTGGATGGGATGTAAAACACAGTGGAAGAAGGGACTTTGGTGAGTTCAGTGTATACAATCATGAGAAAAGAGGGACTGCTGCTACTATGGAGTGA 2805 0.3872 MNNEHKTRVAFTIATITTAAIISIIFTVRCRTRRKQLKSSSTSCYSHSEQKPQSTFKRVLADNSYAPFKHLSFNASGSNDEKGSNVHPFEKEITALLTNHQPEIELGAKKLEMNDSYVWVDTEMQLKELVDVLSKERFFGVDTEQHGLRSFLGFTGLVQISTQQEDYLIDTIALHDSMEILRPVFANPSICKVFHGADNDVLWLQRDFHIYIVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVQYARTDAHYLLYIANCLIIELKQLDNENSCSDDKFHFVLEASRRSNMICLQLFTKEIEASPGESAALSLYSRHQSNQGSPSISNETQFLDTVRQLCTWRDLMARIHDESLKYVLSDQAIVALASQLPASHSEIYNTIVQTDVNAETGPSSFIPSPSPVVCSHLSDISQLLANELVKHGDIYSVILHKCLGQNGSCKLNIFNYALLVNSNLRPTLSNKHSSLKNPRQHSRKASRNLFVKKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEWYLSRDLAKLVDEEPPAIMLLFEPKGHPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKYKRKVASEFGIPLYVRRVIHPGQETEKLNDEGGVSPLQLRSAAVALLRHGPRMPLNRREELTEIVKRYYGGREISEEDLESALQVGMRPKERRRYEKKRGVSFKHSTGNAAAMPEGENHADCAPRMSNVDTLNVNTLDGSYANEETRSGDNRQDDSGEPSFVSDLAVDKANSNGNTMLIKTTDDDDDNDSDDEAVNVDENLNKRQPNVVSDLTDSRDEDSTQTKHHSKLSLLGHGPHGKQVVDHLLKEYGEDGVREFCQRWRQVFVDALKPRFLPGGWDVKHSGRRDFGEFSVYNHEKRGTAATME 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01224 934 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 2 927 IPR045092 GO:0000175|GO:0000467
Tsu06g01224 934 Gene3D HRDC domain 340 441 IPR044876 -
Tsu06g01224 934 MobiDBLite consensus disorder prediction 718 753 - -
Tsu06g01224 934 MobiDBLite consensus disorder prediction 838 853 - -
Tsu06g01224 934 SUPERFAMILY Ribonuclease H-like 51 287 IPR012337 -
Tsu06g01224 934 SMART 35exoneu6 117 285 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tsu06g01224 934 ProSiteProfiles HRDC domain profile. 348 428 IPR002121 GO:0003676
Tsu06g01224 934 MobiDBLite consensus disorder prediction 801 865 - -
Tsu06g01224 934 Gene3D - 24 322 IPR036397 GO:0003676
Tsu06g01224 934 Pfam 3'-5' exonuclease 117 280 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tsu06g01224 934 MobiDBLite consensus disorder prediction 769 789 - -
Tsu06g01224 934 CDD Rrp6p_like_exo 113 306 - -
Tsu06g01224 934 SUPERFAMILY HRDC-like 349 402 IPR010997 GO:0000166|GO:0044237
Tsu06g01224 934 Pfam HRDC domain 353 396 IPR002121 GO:0003676
Tsu06g01224 934 PANTHER PROTEIN RRP6-LIKE 3 2 927 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01224 Tsu-Chr6 11426858 11433929 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01224 K12951 - gmx:100791485 1362.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01224 06 11426858 11433929 Tsu06g01224 06 11426858 11433929 ECH