Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01223 ATGGCAGAACCTAAAGTTAAATACGATCGCCAACTCAGAATATGGGGTGACCAAGGACAGGCAGCCCTTGAGAAATCTAACATTTGCTTACTTAACTGTGGTCCTACTGGTTCTGAGACACTTAAGAATCTCGTTCTTGGTGGGATTGGGAGCATCACTGTAGTTGATGGATCTAAAGTTGAAGATGGTGACcttggaaacaattttttggTGGATGAATCAAGCCTTGGGCAGTCAAAGGCAAAATGTGTTTGCTCATTTCTCCAGGAGCTAAATGACGCAGTTAAAGCAAAATTTGTAGAAGAGTATCCCGATGCTTTGATTGAgacaaatccatcattcttttCTCAATTTACTTTGGTTGTTGCAACACAGCTGGTGGAAAGTTCAATGGTAAAGCTTGACCGAATCTGCAGGGAGGCAAATGTTATATTGATCTTTGCCCGCTCCTATGGCCTTACTGGGTTTGTACGAATCAGTTTGAAGGAACATACTGTGATTGAGTCAAAGCCTGAGCATTTTTTGGATGATCTTCGATTAAATAACCCTTGGCCTGAACTCAAGAGTTTTGCAGAGGGGTTTGACTTGAACGTGCAAGACCCTGTTGCTCATAAGCATATACCCTATGTTGTCATTCTTGTCAAGATGGCTGATGAGTGGGCCAAGAACCACGGTGGTAGGCTGCCATCGAccagagaagaaaaaaaggaatttaAGGATCTTCTTAAGGCTGGGATGGTTGCACAAGATGAAGATAATTATAGAGAAGCTATTGAATCCTCATTCAAAGTATTTGCGCCCCGAGGAATTAATTCAGAGTTGCAACAGATACTTAATGATAGTTCTGTGGAAGTAGACTCCAGTTCGTCAGATTTTTGGGTGTTGGTGGCAGCTCTAAAGGAATTTGTTACAAATGAAGGTGGTGGGGAGGCACCTCTTGAAGGATCTATACCAGATATGACTTCTTCCACAGAGCAATATGTGAATTTGCAGAATATCTACCAGGCTAAGGCTGAGGCTGACTTTCTTGCAATAGAACAAATGACGAGAAATACTTTGAAGAAAATTGGTAGAGATCCAAATAGCATTCCAACGGCAACAATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAAGTTTGCAGATATCGTCCGATTGAAGACGAGTTTAACTCTCCAAACCTATCTGAGTTACAAAAGTACCTAACTGACGAGGATTACAGGTTATCCCCGTTTATAGTTAACTCTTCAAACCTACCTGAGTTACAAAACATTGCTGTGGGAATTTATATTTTGCTTCGTGCTGTTGACCGGTTTGCTGCTAATTACAACAGTTTTCCTGGACAGTTTGACAGTGCAATGGATGAGGATATAGCTCGATTAAAGAGCACAGCAATTGGCCTACTTAATGACTTGGGATGCAACAGTGCTTCTTTGCCTGAGGACCTTATCAACGAGATGTGTCGATTTGGTGCTGCAGAGCTTCATGCTGTTGCTGCTTTGGTTGGAGGAATTGCATCGCAAGAAGTGATCAAGCTCATAACAAGGCAATTTGTACCAATATCGGGGACCTACATATTCAACGGAATCGACCACAAGTCacaaatattgtttttataa 1620 0.4 MAEPKVKYDRQLRIWGDQGQAALEKSNICLLNCGPTGSETLKNLVLGGIGSITVVDGSKVEDGDLGNNFLVDESSLGQSKAKCVCSFLQELNDAVKAKFVEEYPDALIETNPSFFSQFTLVVATQLVESSMVKLDRICREANVILIFARSYGLTGFVRISLKEHTVIESKPEHFLDDLRLNNPWPELKSFAEGFDLNVQDPVAHKHIPYVVILVKMADEWAKNHGGRLPSTREEKKEFKDLLKAGMVAQDEDNYREAIESSFKVFAPRGINSELQQILNDSSVEVDSSSSDFWVLVAALKEFVTNEGGGEAPLEGSIPDMTSSTEQYVNLQNIYQAKAEADFLAIEQMTRNTLKKIGRDPNSIPTATIKSFCKNARKLKVCRYRPIEDEFNSPNLSELQKYLTDEDYRLSPFIVNSSNLPELQNIAVGIYILLRAVDRFAANYNSFPGQFDSAMDEDIARLKSTAIGLLNDLGCNSASLPEDLINEMCRFGAAELHAVAALVGGIASQEVIKLITRQFVPISGTYIFNGIDHKSQILFL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01223 539 PANTHER NEDD8-ACTIVATING ENZYME E1 REGULATORY SUBUNIT 2 539 - -
Tsu06g01223 539 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 7 537 IPR035985 GO:0008641
Tsu06g01223 539 Pfam ThiF family 8 517 IPR000594 -
Tsu06g01223 539 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 2 539 IPR045886 -
Tsu06g01223 539 CDD APPBP1_RUB 7 537 - -
Tsu06g01223 539 PIRSF APP-BP1 1 539 IPR030667 GO:0019781|GO:0045116
Tsu06g01223 539 Gene3D - 2 277 - -
Tsu06g01223 539 Gene3D - 360 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01223 Tsu-Chr6 11418066 11425635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01223 7 78 EF-hand Containing Proteins AT2G30110 33.766 1.47e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01223 K04532 - gmx:100793799 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01223 06 11418066 11425635 Tsu06g01223 06 11418066 11425635 ECH