Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01220 ATGTCTTGGCTTCTCAGATCAACCAAATCTAAGCTCCtatcttcctcttcttctctatcTAGAACCTTCTCTTCAATCCCTCGTTCCACCAATCAGATCGGAGCAATCTCTCCCGCCTCCGCCGAACTCTTCCACCGCACCACCACCACTCTTCCCGCCGCGGATGAAAACGCTACCAAGGTGAACGTGATTGGTGTCCCCAAGAATTTGGAGAATAAGCTTGGTGGTGATTCTAATGTGTTTAATTCTTTGAGATACCAGGCTCTTGGACTGGACACTAATGTGATGGCTGGAGTTAGATATGGTACTAACGTTTGTGCTACCAAGAGTCCAATGCTATTGGGAGTCAATGCTCTGATGGCAAGAAACTTTGTGAGAGGTGTCGGTGCTGACGCATTGGGATTGGCTGGTCATAGACGTTTTATGAGTGATATCCCAAGTAAAGCAAGTGAGACGTCCAGTTTTCGCCCATTATCTCCCCATCTTCCTGTTTATCAGCCCCAGCTTTCTTCGACACTTTCAATTTGCAATAGAATTGCTGGAGCTTTCCTATCTGCCGTCGTCTTGcttttttatatcatatacATGAAAATCGGTGTGGTTAGTCTCACCTATGATTCATTCTACCAGTTCGTATTCTATTCATCAAAACTCCACCTACTTGCCGTTGAGATTTCTGCATTAGCCATGTCCTATCATCTCTACAGTGCAATTCGTCATTTATTCATATGA 732 0.429 MSWLLRSTKSKLLSSSSSLSRTFSSIPRSTNQIGAISPASAELFHRTTTTLPAADENATKVNVIGVPKNLENKLGGDSNVFNSLRYQALGLDTNVMAGVRYGTNVCATKSPMLLGVNALMARNFVRGVGADALGLAGHRRFMSDIPSKASETSSFRPLSPHLPVYQPQLSSTLSICNRIAGAFLSAVVLLFYIIYMKIGVVSLTYDSFYQFVFYSSKLHLLAVEISALAMSYHLYSAIRHLFI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01220 243 SUPERFAMILY Fumarate reductase respiratory complex transmembrane subunits 152 242 IPR034804 GO:0016020
Tsu06g01220 243 CDD SQR_TypeC_SdhC 156 242 - -
Tsu06g01220 243 Pfam Succinate dehydrogenase/Fumarate reductase transmembrane subunit 155 243 IPR000701 GO:0016627
Tsu06g01220 243 Gene3D Fumarate reductase/succinate dehydrogenase, transmembrane subunit 143 243 IPR034804 GO:0016020
Tsu06g01220 243 PANTHER SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT 71 242 IPR014314 GO:0000104|GO:0006099|GO:0009055|GO:0045281
Tsu06g01220 243 PANTHER SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIAL 71 242 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01220 K00236 K03885 gmx:100527396 293.123