Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01216 atgtccCAACAACGAAAAAATGGTCACTCTTTCACGCGGCGGCGGATTAACAATCATGTATCGTTGCTTCGACGATGCATACTCCGCGCTCTACATCGATTCCTTGCCTGCTCCGGACAGAAGCCCGGTGCTAATTCTACGTACAGCATGTTAACGCCGCGTTCAGCATTGCCGTCTCCACCTCCGCCATTGGAATCCGATACCGGATCTTCTCGGCCATCGGTGTTTCGCACAAATGAATTAGACACTGATTTGGTTTCCCTCAAAATTAGCTTGTTGGGTGATTGCCAAATTGGAAAAACCAGCTTTTTGgTGAAATATGTAGGAAATGAAAAAGAGCAGCAGGTAGGAGAAGAGAGGAAAGGGTTGAATCAAATGGACAAAACTTTGGTTGTAAGTGGAGCACGTATATCCTATTGTATTTGGGAAGTACAAGGGGATGGAAAATCAGAAGACCAACTTCCAATGGCATGTAAGGATTCAGTTGCAATTTTGATCATGTTTGATCTAACTAGTAGATGCACATTAAATAGTGTTTTGGGATGGTACAAAGAAGCAAGAAAATGGAATCAGACTGCAATACCAGTGTTGataggaacaaagtttgatgaTTTCATTCAACTCCCTATTGATATGCAATGGACCATCGCTAGTGAGGCAAGAACATATGCAAAGGCATTGAATGCCACTTTGTTCTTTTCAAGTGCAACATACAACATCAATGTGAACAAGATCTTCAAGTTCATCACTGCAAAACTCTTTGATTTACCATGGACAGTTGAAAGAAATCTAAATGTTGGTGAACCCATCATTGATTTCTAA 822 0.4027 MSQQRKNGHSFTRRRINNHVSLLRRCILRALHRFLACSGQKPGANSTYSMLTPRSALPSPPPPLESDTGSSRPSVFRTNELDTDLVSLKISLLGDCQIGKTSFLVKYVGNEKEQQVGEERKGLNQMDKTLVVSGARISYCIWEVQGDGKSEDQLPMACKDSVAILIMFDLTSRCTLNSVLGWYKEARKWNQTAIPVLIGTKFDDFIQLPIDMQWTIASEARTYAKALNATLFFSSATYNINVNKIFKFITAKLFDLPWTVERNLNVGEPIIDF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01216 273 ProSiteProfiles small GTPase Rab1 family profile. 82 273 - -
Tsu06g01216 273 PRINTS Transforming protein P21 ras signature 88 109 - -
Tsu06g01216 273 PRINTS Transforming protein P21 ras signature 130 152 - -
Tsu06g01216 273 PRINTS Transforming protein P21 ras signature 191 204 - -
Tsu06g01216 273 PRINTS Transforming protein P21 ras signature 231 253 - -
Tsu06g01216 273 PANTHER - 50 272 - -
Tsu06g01216 273 Gene3D - 78 264 IPR027417 -
Tsu06g01216 273 SMART rho_sub_3 90 255 IPR001806 GO:0003924|GO:0005525
Tsu06g01216 273 PANTHER MONOMERIC G-PROTEIN 50 272 - -
Tsu06g01216 273 PIRSF GTPase_Tem1 2 273 IPR017231 -
Tsu06g01216 273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 266 IPR027417 -
Tsu06g01216 273 MobiDBLite consensus disorder prediction 47 75 - -
Tsu06g01216 273 Pfam Ras family 89 253 IPR001806 GO:0003924|GO:0005525
Tsu06g01216 273 SMART rab_sub_5 88 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01216 Tsu-Chr6 11311837 11315563 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01216 K07976 - gmx:100792211 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01216 06 11311837 11315563 Tsu06g01216 06 11311837 11315563 ECH