Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01184 ATGGATGAACATGGTTATTGTAATCTTGAAGTTGATGTAAATGGTGAAGAAACTTTCATGGTTGATAAGACTATTATTACTCAATACTCAAGCAAATTGGCTAAAGTATTTGGAAAATCTAGTGGTTCAAGTGGTAAGCTTAAAGTAATATTCCATGATTTTCCAGGAGGTGCAGAAGGTTTTGAGCTTATGTTAAGATTCTGTTATAACAATGGAAAAGGTAATATAAGTCCTTCGAATCTGTTACTTGCGCGTTGTGCCGCTGAATATATGGAAATGAATGAATCTGTTAAAAATGTTTGTAACTTAATGGACCAAACTGAGAAATCACTTCAAGGGATTAGTTATTGGTCATGGTCCGAAATTTTGATTGCTTTGAAGCAATGTCGGAATTTAGTAGTTGACGATTCTTGTGTGATGGTAGAAAAGTGTTTGGATGCTATAGTAGGAAGGTTGGTTTTGTCAAATGAAACGAGTCCGTGTCCATCGACTTGTTCTAATGATAGTTCAGGGATCAGGTTTTCGTGTGACTCGAAAAGTACCGAGAGTATAAAGACGAGTTTCACTCGTTCAGCATGGTGGTTTGaagatcttttgtttttgaCTCCGCAAATGGTTGTCATGTTGGTTAAGTCGATGCTTTCGAGTAAATTGGATCATCATGTTATAAGCAAGTTTCTTCTCTATTATCAGAAGGTGAAATTCGCGACGGCTAGTACCGATGAGAAGTGCAAAATCATAGAAATGGTGATAGATATGCATTATGAAATGGACCAAAGTTCTGTTTCTTTCAAGACATTGTTTGGGATTCTTAGGGTTAGTTTATGTTTGAACATAAGCAAAAATTGTAGGAACAAGTTGGAGAATATGATTGGATCACAATTGGATCAAGTAACCTTAGACAATTTGCTTGTTCCATCTCCTTATGGAATAAACTACTTATATGATGTGAACCTTGTTCTGAGATTTTTGAAAGCATTTCTGCGGCAAGGAAATGGTGCGGTCGCTCCAATTCGGATGAGGAAAGTTGCTAACTTAATTGATTTGTATATAGCTGAAATAGCCCCTGATCCATGTTTAAGAACTTCAAAGTTCTTGGCTCTTGCTACAGCTCTTCCAGATTCTGCTAGGGATTCTTGTGATGAGCTCTACCATGCAATGGACATGTATCTTGAGGTACATACTCAATTATCACAAGATGAAAGGATAAAAATATGCTGTGGTTTAAATTATGAGAAACTTTCACCTCAAGCATGCTTACACCTTTCAAAGAACACAAAATTTCCATCAAAATCATCGGTACAAGCTCTCATATCTCAACAATCTAAGCTCAAAAATTTACTCAATGCTACTACTCCCATTTCAACTCCATACAATGATTCATTATGTGGTTCAAGTGGTTCTGGTCaaaagggaaagaaagaaaaaagcagTGACCAAGTTGTGTTATATGCTGGAAATTTTGATATTCCACCTGATAACGAGAAACTTAAAGCACATTTGCAAGGAATGCAATGTAGGGTTATGGAGTTAGAGAAAATTTGTAGGAAAATGCAAACTCAAATGGCAAAGATGACAAAATCAAAAGCTTCTAGTAATAGTTATGGTAAATCTTTGCCAAAGCTTTGTTCATGA 1635 0.3529 MDEHGYCNLEVDVNGEETFMVDKTIITQYSSKLAKVFGKSSGSSGKLKVIFHDFPGGAEGFELMLRFCYNNGKGNISPSNLLLARCAAEYMEMNESVKNVCNLMDQTEKSLQGISYWSWSEILIALKQCRNLVVDDSCVMVEKCLDAIVGRLVLSNETSPCPSTCSNDSSGIRFSCDSKSTESIKTSFTRSAWWFEDLLFLTPQMVVMLVKSMLSSKLDHHVISKFLLYYQKVKFATASTDEKCKIIEMVIDMHYEMDQSSVSFKTLFGILRVSLCLNISKNCRNKLENMIGSQLDQVTLDNLLVPSPYGINYLYDVNLVLRFLKAFLRQGNGAVAPIRMRKVANLIDLYIAEIAPDPCLRTSKFLALATALPDSARDSCDELYHAMDMYLEVHTQLSQDERIKICCGLNYEKLSPQACLHLSKNTKFPSKSSVQALISQQSKLKNLLNATTPISTPYNDSLCGSSGSGQKGKKEKSSDQVVLYAGNFDIPPDNEKLKAHLQGMQCRVMELEKICRKMQTQMAKMTKSKASSNSYGKSLPKLCS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01184 544 MobiDBLite consensus disorder prediction 525 544 - -
Tsu06g01184 544 SMART BTB_4 7 108 IPR000210 GO:0005515
Tsu06g01184 544 Pfam NPH3 family 193 419 IPR027356 -
Tsu06g01184 544 ProSiteProfiles NPH3 domain profile. 192 443 IPR027356 -
Tsu06g01184 544 Gene3D Potassium Channel Kv1.1; Chain A 1 107 IPR011333 -
Tsu06g01184 544 ProSiteProfiles BTB domain profile. 7 71 IPR000210 GO:0005515
Tsu06g01184 544 SUPERFAMILY POZ domain 6 104 IPR011333 -
Tsu06g01184 544 Coils Coil 494 521 - -
Tsu06g01184 544 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 13 544 - -
Tsu06g01184 544 PANTHER OS12G0117600 PROTEIN 13 544 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01184 Tsu-Chr6 10900530 10904505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01184 19 524 EF-hand Containing Proteins AT3G44820 27.224 1.24e-54 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01184 - - gmx:100784792 846.269