Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01172 ATGGAAACAAGATCTGCAAAACGCAAGAAAATAGCTCAAATTTTACAAGAAAATGAAGCCAAATCAAAACTATCATCAATGGATAGAATTAGTGATTTACCTGATCATGTTATTCATCGTATCCTTCTTTTACTTCCAATTAAATGTGTTGCACAAATGAGTGTTCTTTCTAAGAGATGGAAATTTCTTTGGATAACTTTTCCTGATCTTGATTTCACAACCCTTAATCCATTTCCACTTATTTCtaccaaaaattataaaaaagtttccaaatttgaaaaattaagaCACCCTTTATCTTCACAAAATTTGGATTTCATCACCCAAGTTCTTTCTATTCGTGACGCGAAAAATAAAGACATAAGGGCTCTTTGTTTTCGCGCTTGTTTGAGTTTTTCGCGTTTAAATAATTTAGTTCGTAATGCTATTAGACATAATGTTAGAGAACTTGATATTGAAGTTGATACGGAAGTTGATACAGATGATTTTTTCAACTTTCCTAGATGTGTTATTAGTAGTGAATCTTTGaaagttttgaaattgaaatcgGGTTTTCGTTTACCTCCATCGTCGATTATGAGAAACGGGTTTCAATCTTTGCATACATTGTCATTATCTCTAGTTATTTTGTATAATCAGCCTTCTCTATCCGATCTATTCTCTGAATCGTCTTTTCCtcttttgagaaatttgcaCCTTGATATGTGTTTCGGTTTAATACATCTTCGTGTTGGTTGTCGCGCTCTCGAAGATTTGAACTTGGAAAGATGTTATCAATTACAAGGTTTGGATGTTTGTGGCGCGAAAATTGAAAGAATGAGAGTAACAAGTTGTTTTGATGCATATTGTAACAAGACTTGGGTGAGAATGAATGTGCCAAAGcttgaaaaattgatttggaAATTTAATGCTGTGACTGATGTTACTGTTTTTGAGAATTCAAATTTGTTGCATGAGGCTTCCATTGGCTTCTTTATGTTGAAGGAAGGTAAAGTTAATATGGGTCGGCTTCAAAGTGCTAACGACTTCTTCTCTGGATTGTCTCATGTTCGATCCTTGACTCTTGAAAGTCAGACTATCGAGATTCTATCAAAGTATAACATTATTATTCAGCCATTTTATAATCTTAAATCATTAGAGCTGCATACTGGtttgaagaaaagaaatgtTCAAGCATTAGCATTCCTATTCAGAAGCTCTCCTACCCTCCACACATTGATTCTGGAGATCATTAACGATTACAAGATTGAAAGAAAACAATGGAATAGGGACTTATGGAGCATAACTAGCACAGAAGAAGAGCAATATTGGGAATCACAGATTCCATGTTTGAAATCTTTTCTACAACACTTGAAAGTGGTGAAAATTCAAGGATTTCTTGATTGTGCAAATGAAGTTACATTAGCTAAGTTTCTTCTAAAGCATGGAAAAGCTTTGGAAGAAATGATAGTGTGCTCAGGATATTCAAATAGAAGAGATACTTTGAGGAGACAAAACATAAGGTCACAAATGATGGGATTTTCTTGGGCTTCTTCTAATGCTAAAGTGGAGTTTCAGTAG 1560 0.3224 METRSAKRKKIAQILQENEAKSKLSSMDRISDLPDHVIHRILLLLPIKCVAQMSVLSKRWKFLWITFPDLDFTTLNPFPLISTKNYKKVSKFEKLRHPLSSQNLDFITQVLSIRDAKNKDIRALCFRACLSFSRLNNLVRNAIRHNVRELDIEVDTEVDTDDFFNFPRCVISSESLKVLKLKSGFRLPPSSIMRNGFQSLHTLSLSLVILYNQPSLSDLFSESSFPLLRNLHLDMCFGLIHLRVGCRALEDLNLERCYQLQGLDVCGAKIERMRVTSCFDAYCNKTWVRMNVPKLEKLIWKFNAVTDVTVFENSNLLHEASIGFFMLKEGKVNMGRLQSANDFFSGLSHVRSLTLESQTIEILSKYNIIIQPFYNLKSLELHTGLKKRNVQALAFLFRSSPTLHTLILEIINDYKIERKQWNRDLWSITSTEEEQYWESQIPCLKSFLQHLKVVKIQGFLDCANEVTLAKFLLKHGKALEEMIVCSGYSNRRDTLRRQNIRSQMMGFSWASSNAKVEFQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01172 519 SMART 9598neu4hmm 445 519 IPR006566 -
Tsu06g01172 519 Gene3D Ribonuclease Inhibitor 25 315 IPR032675 -
Tsu06g01172 519 ProSiteProfiles F-box domain profile. 27 75 IPR001810 GO:0005515
Tsu06g01172 519 SUPERFAMILY RNI-like 124 310 - -
Tsu06g01172 519 Pfam FBD 445 483 IPR006566 -
Tsu06g01172 519 Pfam F-box domain 30 63 IPR001810 GO:0005515
Tsu06g01172 519 PANTHER F-BOX PROTEIN-LIKE 18 464 - -
Tsu06g01172 519 SUPERFAMILY F-box domain 21 81 IPR036047 GO:0005515
Tsu06g01172 519 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 18 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01172 Tsu-Chr6 10771650 10774060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01172 26 459 EF-hand Containing Proteins AT5G41840 23.663 4.31e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01172 - - ahf:114927451 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01172 06 10771650 10774060 Tsu06g01172 06 10771650 10774060 ECH