Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01169 ATGGCTAGTACCAATAACAAATCAAATGTTTTTGAAGACTTGTTACCAATGATGGCTAACAAATTAGGTGGTGAAGGTTTAATAAAAGAGCTATGTAATGGTTTTGAATTGTTGATGGACAAAGACAAAGGTGTGATTACTTTGGATAGTTTAAGGAAAAATGCTGCTCTTTTGGGTCTTCAAGATATGAAAGAAGATGAACTTGTTAGTATGATGAATGAAGGTGATTTAGATAGAGATGGAGCATTGACTCAAATGGAGTTTTGTGTTTTGATGTTTAGATTAAGTCCTGAATTGATGGAAGAATCTTGGTTTTGGCTTGAGGAAGCACTTCAACATGAACTtgataacaacaacaataatcacTTTTCCTTGTAG 378 0.3201 MASTNNKSNVFEDLLPMMANKLGGEGLIKELCNGFELLMDKDKGVITLDSLRKNAALLGLQDMKEDELVSMMNEGDLDRDGALTQMEFCVLMFRLSPELMEESWFWLEEALQHELDNNNNNHFSL 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01169 125 Gene3D - 9 124 - -
Tsu06g01169 125 PANTHER CALCIUM-BINDING PROTEIN KIC 7 120 IPR044205 GO:0005509
Tsu06g01169 125 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Tsu06g01169 125 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Tsu06g01169 125 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 7 120 - -
Tsu06g01169 125 Pfam EF-hand domain pair 43 94 IPR002048 GO:0005509
Tsu06g01169 125 SUPERFAMILY EF-hand 26 104 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01169 Tsu-Chr6 10740640 10741230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01169 6 115 EF-hand Containing Proteins AT5G54490 63.964 2.63e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01169 K24345 - gmx:100527206 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01169 06 10740640 10741230 Tsu06g01169 06 10740640 10741230 ECH