Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01162 ATGTTTAAATTTTCTTGTTTTCATGTTAATGGTCAAGGCAACAAGGCAAAGAAAATAGCTCAACCTTCTTCTGAAGAAATGGCGAAAGCTTTGCGAGATAGTTCCAAAAAGTTAGTTAGTAAAGATTTGTCTACCCCTAGGAGCTTAAATTCATCACCTCCAAAACAACATTCACACAAGCTAATGAATGTTTCCGAGAATGATATTCTCGACCAGGATTCAATTGAGCGCATTGGTAGGTTAGAGGATATGAATAGCAAGTTTCTCGATGAAATCGACAGAAAAGTCCACCAAATTGGGCGTCTCAGGAAAAGTCAGTCGGATAGTGAGCTTTGCCAAGGCATAACTGAGGGTGACCATGATCTGGAGTTTTCCAAAAGCCACCACGACTCACCAAATTCAATAGGCAGCCATAATGATCAATCTAAAACGGATTCGAACTTTGAGTTTCAAGTCATTCCTGACCGTTGCAATGATAGCTCAATTTTTTCAATAGGAGATCCGACAGCTTCGGAGAAAGATGCTCATGAAAATTCTGATACTCCATTATCCGGCGATCTTGCCGATGACACTGCTGGCCAGAATTCTGGTCCCAATACACCATCTTTTAGGAAGTCATGTTCCTTACCCAATATCAATGATTGTTTGCTTACTTCTGGAAATAAACAACATGCTTTTAAACATGCATCATCAATGTCAAGATCTTCTGATGATCTTTGTGCTTTAGGCTTGAGGAAGAAAGAGGTGTTCATCAACGAGTCTTACAATCAAATTAGGGAAACTCAAGAAACTGGCATGGAAAAAACTGAAGATAATCATATGGACAGATACTTTGACGATGGTTTTGATTCTCCTATACTTTCTGGCTTACCAAAAGACTGGACAAGACCGGTTACAGATGATATAAGTGATGTAGAACCTCTTCAAGGAGATTACTCGAGTGAAGCTCCTAACATGAATTTTAGCTTTAAGCGGATTGAGGATTGGGTAAGCAGTTTGCAGGACTGTGAACCGCCTCCGGAGGATATAATTGAATTGCCTGAATCTGTTGTTGATCCAGTAGTTGATGTTAACACGGCAAATGCTGTGGCTGCTTCAGTTGTGGATCATAAGATCACTCCAGGAATGGAAGCAGCGAAAAGATATATATCTTCTTTGACTGCCAATGCCACTACAGCTCAGCTGGCAAATCATGGCTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTGAAGGTGCTCAATTTGTCTGGAAATGCAATTGCAAGAATAACTGCCGGTACTCTTCCTCGAGGACTTCACACATtgaatttgtcaaaaaacaatATTTCCACTATAGAGGGATTACGTGAACTTACGCGGCTTCGTGTCCTAGACCTCAGCTACAACCGTATACTGAGAATTGGACACGGTTTGGCATCATGTTCTTCTCTAAAGGAGCTGTACCTTGCTGGAAACAAGATCGGGGAAGTGGAGGGTCTGCACCGCCTGTTGAAACTAAGTATCTTGGATCTTCGTTTTAACAAGATTTCAACCGCCAAATGTCTTGGACAACTTGCAGCGAACTATAATTCTTTGCTAGCTATCAATTTGGAAGGTAACCCTTGCCAGAAAAACGTTGGAGAtgaccaaattaagaaatatctGCAAGGTCTACTTCCCCATCTTGTCTACTACAATCGGCAGCCATTCAAAGCGAACGGATTGAAGGATGGTGCAGATCGTGCAGTTCGATTAGGAATGAATTCACAACAGTTTGATCGCAGTCTTAGAGTGGATCGCAAGTCTACAAGGAAGGGGTCATCATCTGCTCGGAGGCCATCATCTACGTCCTCTCCAAGAGTGTCCATGCCAAAATCGTCCAAAGGAAAGCAAGCCCACCTTCCACCTATCAGAACCAAAACACCTCGCTCTCATTTTGATTCACCCAACAAATTGAATTCGGACATCTTCATGCGCAAAAGTCACAGTGAGGGCACTCTTCTTGGAGCTTTGTAA 2001 0.4153 MFKFSCFHVNGQGNKAKKIAQPSSEEMAKALRDSSKKLVSKDLSTPRSLNSSPPKQHSHKLMNVSENDILDQDSIERIGRLEDMNSKFLDEIDRKVHQIGRLRKSQSDSELCQGITEGDHDLEFSKSHHDSPNSIGSHNDQSKTDSNFEFQVIPDRCNDSSIFSIGDPTASEKDAHENSDTPLSGDLADDTAGQNSGPNTPSFRKSCSLPNINDCLLTSGNKQHAFKHASSMSRSSDDLCALGLRKKEVFINESYNQIRETQETGMEKTEDNHMDRYFDDGFDSPILSGLPKDWTRPVTDDISDVEPLQGDYSSEAPNMNFSFKRIEDWVSSLQDCEPPPEDIIELPESVVDPVVDVNTANAVAASVVDHKITPGMEAAKRYISSLTANATTAQLANHGLVVIPFLSAFVSLKVLNLSGNAIARITAGTLPRGLHTLNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIGEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLLAINLEGNPCQKNVGDDQIKKYLQGLLPHLVYYNRQPFKANGLKDGADRAVRLGMNSQQFDRSLRVDRKSTRKGSSSARRPSSTSSPRVSMPKSSKGKQAHLPPIRTKTPRSHFDSPNKLNSDIFMRKSHSEGTLLGAL 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01162 666 MobiDBLite consensus disorder prediction 41 60 - -
Tsu06g01162 666 PANTHER NISCHARIN RELATED 134 662 - -
Tsu06g01162 666 MobiDBLite consensus disorder prediction 161 205 - -
Tsu06g01162 666 MobiDBLite consensus disorder prediction 129 144 - -
Tsu06g01162 666 MobiDBLite consensus disorder prediction 13 62 - -
Tsu06g01162 666 MobiDBLite consensus disorder prediction 585 653 - -
Tsu06g01162 666 SUPERFAMILY Outer arm dynein light chain 1 400 563 - -
Tsu06g01162 666 SMART LRR_typ_2 498 520 IPR003591 -
Tsu06g01162 666 SMART LRR_typ_2 409 432 IPR003591 -
Tsu06g01162 666 SMART LRR_typ_2 453 476 IPR003591 -
Tsu06g01162 666 PANTHER BNAA09G01440D PROTEIN 134 662 - -
Tsu06g01162 666 MobiDBLite consensus disorder prediction 603 620 - -
Tsu06g01162 666 Gene3D Ribonuclease Inhibitor 360 549 IPR032675 -
Tsu06g01162 666 MobiDBLite consensus disorder prediction 121 144 - -
Tsu06g01162 666 ProSiteProfiles Leucine-rich repeat profile. 478 499 IPR001611 GO:0005515
Tsu06g01162 666 Pfam Leucine-rich repeat 414 512 - -
Tsu06g01162 666 SMART LRR_sd22_2 453 475 - -
Tsu06g01162 666 SMART LRR_sd22_2 476 497 - -
Tsu06g01162 666 SMART LRR_sd22_2 431 452 - -
Tsu06g01162 666 SMART LRR_sd22_2 498 522 - -
Tsu06g01162 666 MobiDBLite consensus disorder prediction 184 205 - -
Tsu06g01162 666 ProSiteProfiles Leucine-rich repeat profile. 455 477 IPR001611 GO:0005515
Tsu06g01162 666 ProSiteProfiles Leucine-rich repeat profile. 433 454 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01162 Tsu-Chr6 10675911 10679618 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01162 - - lang:109355198 736.873