Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01122 ATGGTAACCCTAAACGACAATGGTTCAGAACCCGACGCAAACCCTATTGCGGCGGAGACACCAGAACCGGTGGCTGAAAATCTTAGTAACAACAACGGGTCGGAACTTGACCCGAACCATGTTACGGCGAAGACACCGGTAACAGAATCTGAAAAGCTTGATACTTTGGGTGATGACATTCCTATTGAGAAAATTGTTGAAAAGATTACGTTAGTGGAAGATTCTCCTTCAGTTGAGGTGAATGGGAATGAAGATAAAGATGAGAAAGAGGATGATTGTGAAAGTGAAAGTGAGAGCGGGAGTGAAAGTGAGGAGTCGGAGAGTTCTTCTTCGTCGTCATCGGCGTCATCTTCATCGTCTGATTCTggtagtgatgatgatgaagatgacgACGATATGAAAGATGAAGTTGAAGATGGGGAGATAAGTGATTCTGAGGAAGAGAAGATGGTTAGTTGGAGTCCTGCTGTTGATGGTGATTTTGATGAGGAGGATGTTGTAGTTGGACCAATTAGGTCAAAGAATGAGATTCAgAATTTGCCACCAGTTCCGCCGGTGGATGTGACTTTAGAACCGCACCATCAAATGCTACCCGTTGGAGTTGTTATGTCGACTCTTGGTGCTCAAGTCATCGTCGAAGGAGTGGAGAAGCATGAACCTCTTAATGAGGGTTCTATTCTCTGGCTGACTGAAAGCTGCAAACCACTAGGTTTAATTGATGAAATCTTTGGACCAGTCAAAAACCCATATTATATTGTGAGATACAATTCTGAAAGTGAAGTCCCTGCGGGGATCCAAGGGGGAACAACTCTGGTCTCGTGTGTTCCAGAATTTGCTGATCGTGTGCTTAATAATAAGGATCTTTACCGGAAAGGCTATGATGCATCTGGTGCGAATGATGAAGAGTTGTCTGATGAAGTAGAGTTTTCAGATGACGAGAAAGAGGCTGAATACCGGAAAATGCAGAAAATGACAAAGAGAGGGGTAAATGATCAAAATCCTGGcaagagaaaaaacaataaaaagaaattttcacCAAGAGATCATAGGTTACCTTCCACCCCCAATGCACCTGCAGCAGCACAGCATGTAATACCTACTGTCCCTCATGCACCTGCAGCAGCACCATTGGTTAATCATGGAAGCCAGTCTCCTTTTCTAGGCATTGGACAAGGTGGAACTACCACAGTTTCTCAATTTCAACCTTTAAATGCAGGTCCTAACTTTGCTGCAAACGGAATGTGGACAAATCAGACAATATTTCAACAGCAGCCACAACCTTCCCAGCTTCCAAATGCATTTCCTTCAAATGCCATGTCATATTATCCACAAAACACACAATTTTCTCTACAGTTTCCTGTGCCAGGAAATCCATTTCAACAGCAAATGAATCCCAGTAACGGAACTCATTTCCCAACTATGATGACTGGCGTACAGCCCAATATATTTGCACAACAACCAATGTATGCACCGGGGTTTGTGGGTCAAAACCAAATGCCATTTGATTCAAGACCACCCTTCCAACAGATTCAACAACCACCTATCTTTCAAGCACAGCAGCAGGGTTTTTCACCCAATGAGTTGCAGCAACGACCTATCTTTCAAGCGCAGCAGCAGGGTTTTCCACCAGCTGAGTTGCAGTCAGAAAGAAACCTAAACTTGCGTCCTAGTTCTATTTCTAGCAACCCCTCCCAATTTCATCCAGGTTCATCAGGTAGCCGAGGGAGACCAACATTTCGTGGCGCCGGTAGGAGAGGATGGCGGCCTTCTAGGTGA 1776 0.4336 MVTLNDNGSEPDANPIAAETPEPVAENLSNNNGSELDPNHVTAKTPVTESEKLDTLGDDIPIEKIVEKITLVEDSPSVEVNGNEDKDEKEDDCESESESGSESEESESSSSSSSASSSSSDSGSDDDEDDDDMKDEVEDGEISDSEEEKMVSWSPAVDGDFDEEDVVVGPIRSKNEIQNLPPVPPVDVTLEPHHQMLPVGVVMSTLGAQVIVEGVEKHEPLNEGSILWLTESCKPLGLIDEIFGPVKNPYYIVRYNSESEVPAGIQGGTTLVSCVPEFADRVLNNKDLYRKGYDASGANDEELSDEVEFSDDEKEAEYRKMQKMTKRGVNDQNPGKRKNNKKKFSPRDHRLPSTPNAPAAAQHVIPTVPHAPAAAPLVNHGSQSPFLGIGQGGTTTVSQFQPLNAGPNFAANGMWTNQTIFQQQPQPSQLPNAFPSNAMSYYPQNTQFSLQFPVPGNPFQQQMNPSNGTHFPTMMTGVQPNIFAQQPMYAPGFVGQNQMPFDSRPPFQQIQQPPIFQAQQQGFSPNELQQRPIFQAQQQGFPPAELQSERNLNLRPSSISSNPSQFHPGSSGSRGRPTFRGAGRRGWRPSR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01122 591 MobiDBLite consensus disorder prediction 538 591 - -
Tsu06g01122 591 SUPERFAMILY Translation proteins 196 259 IPR009000 -
Tsu06g01122 591 Gene3D Probable tRNA pseudouridine synthase domain 168 272 IPR038664 -
Tsu06g01122 591 MobiDBLite consensus disorder prediction 313 338 - -
Tsu06g01122 591 MobiDBLite consensus disorder prediction 122 145 - -
Tsu06g01122 591 MobiDBLite consensus disorder prediction 538 572 - -
Tsu06g01122 591 MobiDBLite consensus disorder prediction 104 121 - -
Tsu06g01122 591 MobiDBLite consensus disorder prediction 85 103 - -
Tsu06g01122 591 MobiDBLite consensus disorder prediction 51 70 - -
Tsu06g01122 591 Pfam Gar1/Naf1 RNA binding region 197 261 IPR007504 GO:0001522|GO:0042254
Tsu06g01122 591 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 18 541 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Tsu06g01122 591 MobiDBLite consensus disorder prediction 1 162 - -
Tsu06g01122 591 MobiDBLite consensus disorder prediction 24 49 - -
Tsu06g01122 591 MobiDBLite consensus disorder prediction 294 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01122 Tsu-Chr6 10165122 10168494 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01122 K14763 - gmx:102660668 580.482