Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01117 ATGGAACAACCAATAGTTCTCAACAATAGCAACAATGGTAGTGGTGGATGTTTTGACTATGAAAAGATTATTAATTGGTTTGAAGATGTCTCTAAGAACACTGGCTCTGTTCAAACTCAGATATTAAGCAATATTCTGAAACAAAATCATGGTGTGGAATATCTCAAGAAATGGTTAGGGGCTTACAATATTTTGGAAATGGAACCATGTGCATTGGAATCCCTTTTCACTTCTTTGGTTCCTATTGCTTCTCATGCTGATTTTGAACCATTTATTCAAAGGATTTCTGATGGAGACTCTGCTCCTTTACTCACTCAACAACCTATAACCACTCTTTCCTTAAGTTCTGGAACCACTGAAGGAAGGCAGAAATTCGTACCCTTTACCAGACATAGTGCTCAAACCAcgcttcaaatatttactttatcaGCTGCCTATAGATCAAGGGTTTACCCAATAAGGGAAGGAGGAAGGATTCTTGAATTCATATATGGCAGCAATTGTTTcaaaacaaaaggaaatttAACAGTAGGAACAGCTACAACACATTGTTATGCAAGTGAAGAATTCAAAACCaaacataacaaaacaaaatcatttagtTGTAGTCCACAAGAAGTGATTTTCAATGGAGATTATAAACAATCAACTTATTGCCACCTTCTTCTAGGCTTATTCTATTCTCAACAAGTAGAATTTATCACTTCAGCTTTTGTCTACACAATGGTGCAAGCATTCACTACATTTGAAGAACATTGGAGAGAAATTATTAATGACATTAAAAATGGTACTCTAAGTTCAAGAATTAAGTCACCAAAATTAAGAGAAGCTATTTTGGACATAATAAGTGGTCCAAACATAAAGTTGGCTACAAAATTAGAAGATTATTGTGAGGAGTTAGAAAAAGttgattggtttggtttgatacCAAAGATATGGCCAAATGTGAAGTACTTGTATTCAATAATGACAGGTTCAATGCAACCATATTTGAAAAAACTTAGACATTATGCAAATGGGTTGCCATTAATAAGTGCTGATTATGGATCAACTGAAAGTTGGATTGGAGTTAATGTTGATCCTTGTTTGGATCCAGAACAAGTAACTTTTGCTGTTGTTCCTACTTTTTCATATTTTGAGTTCATACCTCTTCATAGAAATAAACAAGATTGCagtgattttgttgaagataAGCCAATTCCATTGTCAAAGATTATTGTTGGTCAACAGTATGAAATTGTTCTCACAACTTTTACAGgGTTGTATAGATGCAGGCTAGGAGATGTGGTAGAAGTGGCAGGATTTCACAATGGGACCCCAAAATTGAACTTCATATGCAGAAGAAAACTAATCCTAACAGTAAACATAGACAAAAATACAGAGAAGGACCTACAATTAGTGGTAGAGAGAGGTTCACACATTCTAAATAAAGCCAAAGCTGAACTTGTTGATTTTACTAGTTATGCTGATGTTACAAACCAACCTGGTCACTATGTTATTTACTGGGAGATTAAAGGTGAAGTTGAGGATAATATTCTTGATGCTTGTTGTAGAGAAATGGACTTATCTTTTGCTGATCATGGATATGTTGTTTCAAGAAAAACCAATTCAATTGGGCCACTTGAACTTTGCATTTTGGAAAGTGGAGCTTTTAAGAAGATTTTGGATAATTTCATTTCCAATGGAGTTGCTTTGAACCAATTTAAGACTCCTAGGTGCACTAACAATCATGTCTTGCTCAAAATTCTTGACAATTGTACCACTAAAAGGTTTCTTAGCACAGCTTATAGTTTAGATTAA 1800 0.3294 MEQPIVLNNSNNGSGGCFDYEKIINWFEDVSKNTGSVQTQILSNILKQNHGVEYLKKWLGAYNILEMEPCALESLFTSLVPIASHADFEPFIQRISDGDSAPLLTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQIFTLSAAYRSRVYPIREGGRILEFIYGSNCFKTKGNLTVGTATTHCYASEEFKTKHNKTKSFSCSPQEVIFNGDYKQSTYCHLLLGLFYSQQVEFITSAFVYTMVQAFTTFEEHWREIINDIKNGTLSSRIKSPKLREAILDIISGPNIKLATKLEDYCEELEKVDWFGLIPKIWPNVKYLYSIMTGSMQPYLKKLRHYANGLPLISADYGSTESWIGVNVDPCLDPEQVTFAVVPTFSYFEFIPLHRNKQDCSDFVEDKPIPLSKIIVGQQYEIVLTTFTGLYRCRLGDVVEVAGFHNGTPKLNFICRRKLILTVNIDKNTEKDLQLVVERGSHILNKAKAELVDFTSYADVTNQPGHYVIYWEIKGEVEDNILDACCREMDLSFADHGYVVSRKTNSIGPLELCILESGAFKKILDNFISNGVALNQFKTPRCTNNHVLLKILDNCTTKRFLSTAYSLD 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01117 599 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 20 596 IPR004993 -
Tsu06g01117 599 Pfam GH3 auxin-responsive promoter 26 576 IPR004993 -
Tsu06g01117 599 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 20 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01117 Tsu-Chr6 10117998 10125192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01117 27 594 EF-hand Containing Proteins AT1G23160 34.192 4.20e-116 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01117 K14487 - gmx:100792358 1000.35