Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01077 ATGGTACTTATTGCCTTCGAATTCAACTCCACTTTCACTTCCTCTCCTTTACATTATGCTTCCAATTCATTCTCTCATACTAGAAACTTCAATTTTACTCCAATTATGCTTTCTATCAAGAATGATGCTTCTAATCATTCTAATTTTGTTGCTCAAGAGATTCTTCACAAGGAATTGGAATTTAAACCATCTTTTGATCAATATTTAAAGGCTATGGAATCTGCCAAATCTGTTATTAGGGTTAACAAGACTTCTTCTGATGATGGAAATGGAAATTTTAAAAGGGTTGGACCAAAAATTCGTAGGAAAGATGCAGTTTCCGAAGAGGATGAAGGCTTTTCCATGGATAGTGGTAAGAATAGAGAACAATTGAATAAAGGGTTTAAGAATGAATATGGtgggaaagaaagaaattttgatTATAAGACAAAGCATAAACATGGGCAAACTGTAAGACAAGATGGGTTGAAACGTCGGAGTCGTAGTTTTGAGCCAAAGTCTGATGACTGCAGTGTGATTAAGAGTCAAGGGGAAGATGGAAGCGGAGGAGGGATACACAATGACATAATTAGGTTTAATTCGAATGGTGGCCGTGGTGGGAGTGTTGTAGAGAGGGGTGTCAATAATGAtttatattcttcaaagatgtCGAAAAAAGAGGATTTTGGTAGAAGAGAAAGAGATGATAGTAGAAAGGGTAAAACGCTTGGTGGTGATAGTTTTGTAGGTAGGAAAAAGCCTATGGATCGCGGTGCTGGTAAAAGATATAGCGGAACTGAGAGTTTGACGAATAGAAATGGACGGATGATTGTCAAATCAAATGGAAGTAGTAGTTTGAATGGCGGCCGTGGTGAGAGTGTTGTAGAGAGGGAGGTCAATTATGGGTTACATTCTTCAAAGATGTCAGAAGAAGAGGGTTTTGGTAGAAGAGAAAGAGATCATAGTAGAAAGGGTAAAACCCTTGGGGATGATAGTTTTGTAGGTAGGAAAAAGCCTATGGATAATGGTCATGGTAAAAGATATAGTGAAATTGAGAGTTTGACGAATAGAAATGGACGGATGAATGTTCAATCAAATGGAAGTAGTAAGCGTTTTTTGAATAGGGGTTATGATTCGGATAATTTGGAGGTTGAACGAGCGGCATTTAAGAATCTTGAGGGCCCGAACAATGTTATCAGTAAGGCTCACTTTTCGCATAAAGAAAGTTTTGTAGATAGAAAAAAAGCTATGGACAGTGGTCCTGGTAAAAGGTATAGTGAAATTGAGAGTTTGATGAATAGAAATGGACGGATGAATGTTAAATCGAATGGAAGTAGTAAGCGTTTTCTTAATAGGGGTTATGATTCGGACAATTTGGAGGTGGAACGAGCAGCGTTTAAGAATCTTGAGGACCCGAACAATGTTATCACTAAGGCTCACTTTTCGCATAAAGAAATGGAGGAGAGAATCCAGAAGCTAGCTAAACAGCTGAATGGTGTGGATGTCAATTCACCTGAATGGATGTTTTCTAAGATGATAAGAAGTGCAAAGCTCAAATTTAATGACTATTCTATAAGAAGGCTTATCACAATCTTAGGAAATCTCGGAAACTGGCAGCGAGTGATACAAGTCATCGAATGGCTTCAAGCGCGTGAGCGCTTCCAGTCCCATAAACCAAGGCATGTATACAATGCTGCACTTGACGCACTTGGGAAGTTGAGGAGACCGGTGGAAGCACTAAATGTATTTCATACAATGCAGCAACACATGTCCACATATCCTGACTTAGTAGCTTATCATAGTATTGCTGTTACTCTTGGGCAAGCAGGGCACATGAAGCAACTCTTTGATGTGATTGATATTATGCGATCGCCACCAAAGAAGAAGTTCAATAAAGGGGTATTTGAGAACTGGGACCCAAGGCTGGAACCTGATATTGTAGTTTATAATGCAGTCCTTAATGCATGCGTTAAGGGGAAACAGTGGGAAGGAGCATTTTGGGTTTTACAGCAGTTAAAGATGCAGAACATAAGACCTTCGGCTGCAACATATGGCCTAGTTATGGAGGTGATGTTTTCATGTGGCAAATACAACTTGGTTCATGAATTTTTTAGAAAACTTCAGAAATCTTCTATTCCTAATCCATTAACATATAGAGTTCTCGTAAATACATTTTGGAAAGAGGGAAAAATTGATGAGGCTGTATCGGCTGTCCATGAAATGGAAAGACGTGGAATTGTTGGTTCTGCTTCTCTTTATTATGATCTAGCTCGATGCCTGTGTGCAGCTGGAAGAAGTCACGAGGCACTGATGCAGATAGACAAGATATGTAAGGTTGCAAGTAAACCACTGGTAGTGACCTACACTGGCTTAATGCAAGCAAGTCTAGACTCTGGAAACATTCAAGATGGAGCttacatttttgaaaaaatgaaggACATTTGTGCTCCGAATCTGGTTACTTACAACATAATGCTGAAAGCATACGTTGATCATGGGATGTTTCAAGAAGCTAAAGAGTTGTTTGAGCAAATGTTAGAAAACACAAATCATCTAAGTAGAAAAGATGATTACAAAAGGCGAGTGATACCAGATATATACACATTCAATACCATGTTAGATGCATGTGCCGCAGAAAAAAGATGGGATTATTTTGACTATGTTTACCAGAGGATGCTGTACCATGGTTATCACTTCAATCCAAAACGGCATCTTGGAATGATTCTGGAGGCTTCTAGAGCTGGAAAGGAAGAGCTATTGGAGATAACATGGAAGCACTTGGATGCCACAGATAGAATTCCACCAGTTTCTCTAATCAAGGAGAGGTTCTGTACAAAGCTTGAGAAGGATGATTTTATTGTTGCTCTCAAATGCATCACCAGTAATACCCCAAAAGACTTGCAACCATTTTCGAAGTCGTCGTGGTTGAATctattcaaagaaaattctcaACGGTTTCAGAAGGATACACTTGTTAGACTAATGAATGCAGCTAGCAATGTAATTTCCAATACTAGTGTGCCAAATCCAGCACTTGTGTGTTTAATTCAATCATGCAAAGAATTTTGTTTAGCCACTAATCCCAGTGTAGCTGACATGGATTCAGCAAACAATGTATTTGCATTAAAAAGCAAACGGGAAGTAACCAATACAAGGCGAACAGTTGTATCCTAa 3153 0.3822 MVLIAFEFNSTFTSSPLHYASNSFSHTRNFNFTPIMLSIKNDASNHSNFVAQEILHKELEFKPSFDQYLKAMESAKSVIRVNKTSSDDGNGNFKRVGPKIRRKDAVSEEDEGFSMDSGKNREQLNKGFKNEYGGKERNFDYKTKHKHGQTVRQDGLKRRSRSFEPKSDDCSVIKSQGEDGSGGGIHNDIIRFNSNGGRGGSVVERGVNNDLYSSKMSKKEDFGRRERDDSRKGKTLGGDSFVGRKKPMDRGAGKRYSGTESLTNRNGRMIVKSNGSSSLNGGRGESVVEREVNYGLHSSKMSEEEGFGRRERDHSRKGKTLGDDSFVGRKKPMDNGHGKRYSEIESLTNRNGRMNVQSNGSSKRFLNRGYDSDNLEVERAAFKNLEGPNNVISKAHFSHKESFVDRKKAMDSGPGKRYSEIESLMNRNGRMNVKSNGSSKRFLNRGYDSDNLEVERAAFKNLEDPNNVITKAHFSHKEMEERIQKLAKQLNGVDVNSPEWMFSKMIRSAKLKFNDYSIRRLITILGNLGNWQRVIQVIEWLQARERFQSHKPRHVYNAALDALGKLRRPVEALNVFHTMQQHMSTYPDLVAYHSIAVTLGQAGHMKQLFDVIDIMRSPPKKKFNKGVFENWDPRLEPDIVVYNAVLNACVKGKQWEGAFWVLQQLKMQNIRPSAATYGLVMEVMFSCGKYNLVHEFFRKLQKSSIPNPLTYRVLVNTFWKEGKIDEAVSAVHEMERRGIVGSASLYYDLARCLCAAGRSHEALMQIDKICKVASKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKDICAPNLVTYNIMLKAYVDHGMFQEAKELFEQMLENTNHLSRKDDYKRRVIPDIYTFNTMLDACAAEKRWDYFDYVYQRMLYHGYHFNPKRHLGMILEASRAGKEELLEITWKHLDATDRIPPVSLIKERFCTKLEKDDFIVALKCITSNTPKDLQPFSKSSWLNLFKENSQRFQKDTLVRLMNAASNVISNTSVPNPALVCLIQSCKEFCLATNPSVADMDSANNVFALKSKREVTNTRRTVVS 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01077 1050 MobiDBLite consensus disorder prediction 257 283 - -
Tsu06g01077 1050 MobiDBLite consensus disorder prediction 94 173 - -
Tsu06g01077 1050 Coils Coil 476 496 - -
Tsu06g01077 1050 MobiDBLite consensus disorder prediction 296 340 - -
Tsu06g01077 1050 MobiDBLite consensus disorder prediction 215 340 - -
Tsu06g01077 1050 Pfam PPR repeat 555 581 IPR002885 -
Tsu06g01077 1050 Pfam PPR repeat 710 739 IPR002885 -
Tsu06g01077 1050 Pfam PPR repeat 860 889 IPR002885 -
Tsu06g01077 1050 Pfam PPR repeat family 637 681 IPR002885 -
Tsu06g01077 1050 SUPERFAMILY TPR-like 707 841 IPR011990 GO:0005515
Tsu06g01077 1050 PANTHER OS01G0674700 PROTEIN 416 1021 IPR044645 GO:0009658
Tsu06g01077 1050 PANTHER OS01G0674700 PROTEIN 21 401 IPR044645 GO:0009658
Tsu06g01077 1050 Pfam Pentatricopeptide repeat domain 776 824 IPR002885 -
Tsu06g01077 1050 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 858 892 IPR002885 -
Tsu06g01077 1050 MobiDBLite consensus disorder prediction 215 253 - -
Tsu06g01077 1050 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 811 841 IPR002885 -
Tsu06g01077 1050 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Tsu06g01077 1050 PANTHER OS01G0674700 PROTEIN 21 401 - -
Tsu06g01077 1050 PANTHER OS01G0674700 PROTEIN 416 1021 - -
Tsu06g01077 1050 TIGRFAM PPR: pentatricopeptide repeat domain 710 741 IPR002885 -
Tsu06g01077 1050 TIGRFAM PPR: pentatricopeptide repeat domain 860 886 IPR002885 -
Tsu06g01077 1050 TIGRFAM PPR: pentatricopeptide repeat domain 640 673 IPR002885 -
Tsu06g01077 1050 TIGRFAM PPR: pentatricopeptide repeat domain 555 588 IPR002885 -
Tsu06g01077 1050 TIGRFAM PPR: pentatricopeptide repeat domain 813 841 IPR002885 -
Tsu06g01077 1050 MobiDBLite consensus disorder prediction 82 185 - -
Tsu06g01077 1050 Gene3D Tetratricopeptide repeat domain 476 623 IPR011990 GO:0005515
Tsu06g01077 1050 Gene3D Tetratricopeptide repeat domain 624 728 IPR011990 GO:0005515
Tsu06g01077 1050 Gene3D Tetratricopeptide repeat domain 761 924 IPR011990 GO:0005515
Tsu06g01077 1050 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 707 741 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01077 Tsu-Chr6 9796731 9805026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01077 658 918 Glycosyltransferase AT1G05670 22.677 1.26e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01077 - - mtr:MTR_0001s0430 1219.91