Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01070 ATGCATCTTAATCAAGCTATTATGGGGTCAAAGGCCGAAGAATACTCTGATGAAAACTGTCGCTTAGTGGAGGACAAACGTTATTCAACGGACGAGGGTGATGAATCTTATGTTAGGAGCAGAACTTGTGAAAGATTGAAGCATTCTGGCAGTGAAACCAGTAATATGCCTAGTATTTTCTCCAGTCATGATTCTCTATCTGAAAATACCAAGAGTAAACAGGCCATTTCAGAAAAGTGTCAGGATTGCAAGTGTTTAGAAGGTCTTGATGATAGCATTAATTGTATCGATAGACCCGGCAATACTGATTTAGTGAGTTGTAGTAATCAAATAAATtcagacaaaataaatatatcttcTAGTTCAGCTTCAGTTAGTCTCTTTGGGGAACAAGAGTCTCGAAATGCGCAATCTGTTGATATCTCTGGTTCATCTGAGATTCCAGAAAAATTGTCAGAATGCTGTATAGAAAATGTTGATTTATCATTGACCAAAGAGAGAGAACCTATTATTGTTTCTGGTGAAAAATCTCTTCCAGATAAGGATGAATTTGTTAGTGATACAGCCAAAGTGTCACAAAAAATGTATCCAAAGTCAGAAACTGATGCTGACAATGATGTTAGTGTTGCTGAAGATGATCATAAACGTTCAGCCCATGATGGACTGCATGAGAAGGTTGAGGAACGGGTTACGCTTGGGATATCTGTACCTCAACCAGAAGATGAGAGTGATGAATCAGATGTTATTGAGCATGATGTAAAAGTATGTGACATCTGTGGAGATTCTGGCCAAGAGAAACTACTTGCCATATGTAGTAGGTGCAGTGATGGTGCAGAGCACACATACTGCATGCGGAAAAGGCGTCGAAAGGTGCCTAAAGGAGTTTGGTTTTGTGAGGAATGCAAATGTGCTGAGGAGACTACTGCCAATCAAAGATTGGatgttgaaagaaaaaatagtcaTAAAGTTGGTTCCAGTTCTCAAATATCTGGCAAAAGGCCTTCTGAAATCATGGTAGTAGCTGAAGCAGCAAAGAGGCGAGCCCTCGAATCAAGCGCAGGATCACCGAAGGCATCAAGCCCCAGGAGATTAGTTCCACTGTCACGAGAGTCTTCATTCAAGAACTTAGACAATGGAAAGGTGAAACCTGGTCAAACTTCAAGGAGAATGGGTTCATTATTGAAGTGTAGTTCATTCAGCAACAATTCCAAATCAAGAGTCAAACTTGATGAAGATGTTTGTCAAAAGCAGAAAGGAGGTGGTGAACATGTTTCTAAGAACATGGAGACACCTGGTGGGACGGTAGGGAAATCAATGTCATTCAAATCGTCAAATTTGGGTCGTGCTACTgtatcaaaagttaaaatgcTTTCTTCCAAGTCTGAAACTTCTCAGGGTTTGAAAGGATCAAGCCTTGCAAAAGAATCAGCTGTGTTTGACAGGAAATCTCTGGCTAGGATTGATCGGCCTGTCGTCTGTTCCACAATGGCTAGTTCTGTCATTTCCACATCTAAGCATGATCAGAAGTCTACTCGACATGGTGAAACTGTTCAACCTTTAGCAACTAACTGCAACCAGGAATTTAAAGTTAACCATGATGGGAAATCAAGTTCATTATCAAAGCCTGTgaataatataagaaacaaaatccCAGAACCTCAAGTTATTTCAGAGAGAGCGTCAGCCAGTGTGCATGAAACTCAACAGGATGGGCTGCCTCGATTACGAGAAAAAGCAAACCAGGTTGACAAAGCAAAAGATAGTTATACTCACCGTGTGAGGTCAGGTACTAATGCTTCAACATCTCCGTTCTGTCATAAATGTAAAGATTATGGCCATGCTACAGAGTGTTGCACAGTTGGTGGAACACATGAATTTGGTGCTGACAGATCGGTTACTGCCACAAGTAGTTCAAAAGAGTTGCATAAAGGTAGTAGACTGAAAGCTGCACTCCAGGCAGCTTTGCTTAAAAGGCCTCAAATACACAAGAAGAAAGATCTACATGATCAGTCAGACACAGTCTTGAAATGTAAAGTCAGTTCTCAAGACCAAGTGGAGGTCTCTGCTTCTAACACACTGAAAAATGGTATTTCTGTTGAAGAAACCAATGTGAGGTATGAAAGGCAGAATTCTAGATTTGAAACGTCCAAATGTTTGTCTGCCAATGATTTGAATCACGTTAAAACTGATTTGTGCTCTCAACTGAAGAATTCGAATTCTATTAGTCCTTCTTCTGAAAAGCCTGCAGTGAGAGACTTGCTTAATCATGCTTTGGCAATTTCAAGTGTTACTTCAGAGATGTCAGCCATTCCAGAATACAAATACATCTGGCAGGGTATCTTTGAAGTGACTAGAAGTGGAAAGTCTCCTGAACTTTATACCGGAATTCAAGCACATTTATCCTCATGCGCTTCCCCAAAGGTTCTTGATGCAGTGAACAAGTTTTTACCCGAAATTTCCCTGCATGAAGTTTCTCGCTTGAGCACATGGCCTTCGCATTTTCATCAATGTGGTGCTAAAGAAGATAATATTGCTCTTTACTTCTTTGCCAAAGACATTGAAAGTTATGAGAGACACTACAAGAGTCTATTGGATCACATGATTAGACATGATTTAGCACTCAAAGGGTTTATTGATGGTGTCGAACTTCTCATATTTGCTTCCAATCAGCTTCCTGAAAATTCACAGCGTTGGaatatgttatttttcttatgGGGAATATTTAAAGGGAGGAGGGTTAATCATTCAGATTctgtaaaaaatattgttttaccAAGTTTGAATGTGGCGGTGCCAAATGAGAAGGATTTTCCGACTGCTGTCATGACCGTGTCTGATACTCGCTGTTCACCAGTGCGCATCGATGAAGAATCAATCGCTTGTGGTAAAGCTTGCAGTGAGCTTCCAGCGACTTCCATTGACAAAGGTCATATTATGCTAAGTAAGGATTTTGATGTAAAAGACACTATTTTTGACCACACACATTTGGGTTCACAAGTAAACTTTGATAGGCAAGATAGTAGAATCAACAACACCAAGTCTTCATCAAGGATTTCAACAAACGTTATACAACCATGTCGAGAAATGAATACCATTGATTCATCCCTGAAAGAGAAAGGTAGTTTATCAGAACATGGACTGCACAGAGAGTCTAAATCTCCTGAAGATGCGGGAACAATTGTAAGGGCTATGATTGTGGAAACAAAACCTAATTATGGTATTTCTGTCAAACAAGAGAACTCCATGTCTTCAAGGATTCTTTATGTTGACAATCAAGAGATACTCACTGCAAACAGCAGCACCCTGAAAGATAAAATTTCAGAGAGAACAAACAATGATGAAAATCAACGAAGGCCTAAAAggaaagagagagaagatgatCTCAATATTAAGGTGGAAGCAACAGATCAGGGAGATCTGGCCATAGAAGCGGTCAACTGCCGGCTACCTAATGATATAAAAGTTGAGCATATAGACCATTCTAACACAGTTATAGAGGCTCCTGCAGCTAGTTGTCAGGAAATGCGTCGGACTAAGATGAATGTAAAGTTGGAAGATACAGACAGTTCTAGCAAGATGCAGTCAGGTTTCACTGGAATCTATGGGTGTTACAATTCTGTAGCTAGGGATTCTTTTACTGGAAGTTCTGCATCACTTGTAAATGATTTTGGTTCCTCTTCTTCAGTTGAAGACAAAGGATGCAAAGAATCTTGTGATGAGAAAATCATCCATGAGGACCTCGGAACGATGGAAAAAACCTTCTTCCCTATTGATACACACAATACAACTGACTCGCGATTGGTGTTGAGTAGCATGTCACTGAAAAGGCCTCATGAGTGCGGTGAGAAATTTGAAGTTGGGATACCGAGTCTCGAGCTTGCTTTGGGAGGTGAAATGAAACAGTCAAAGAACGGTACACTTCCTTTCCTTGCTGGGAAAGCTGACAAGAAAAATAACCAGGAAAACACTCCAGATTGTTTGGAAACTAAGCAAGAGGATGATGACAGTGTTGCCGCATCTCTTTCCCTGTCTCTATCTTTCCCATCTTCAAACAAGGAAACCACAATACCTGCTTCAAAAGATGAGCATCACATGAATTCTTCATTGCTCCTTTTTGGGAGATTCACTGACAAATAA 4137 0.3923 MHLNQAIMGSKAEEYSDENCRLVEDKRYSTDEGDESYVRSRTCERLKHSGSETSNMPSIFSSHDSLSENTKSKQAISEKCQDCKCLEGLDDSINCIDRPGNTDLVSCSNQINSDKINISSSSASVSLFGEQESRNAQSVDISGSSEIPEKLSECCIENVDLSLTKEREPIIVSGEKSLPDKDEFVSDTAKVSQKMYPKSETDADNDVSVAEDDHKRSAHDGLHEKVEERVTLGISVPQPEDESDESDVIEHDVKVCDICGDSGQEKLLAICSRCSDGAEHTYCMRKRRRKVPKGVWFCEECKCAEETTANQRLDVERKNSHKVGSSSQISGKRPSEIMVVAEAAKRRALESSAGSPKASSPRRLVPLSRESSFKNLDNGKVKPGQTSRRMGSLLKCSSFSNNSKSRVKLDEDVCQKQKGGGEHVSKNMETPGGTVGKSMSFKSSNLGRATVSKVKMLSSKSETSQGLKGSSLAKESAVFDRKSLARIDRPVVCSTMASSVISTSKHDQKSTRHGETVQPLATNCNQEFKVNHDGKSSSLSKPVNNIRNKIPEPQVISERASASVHETQQDGLPRLREKANQVDKAKDSYTHRVRSGTNASTSPFCHKCKDYGHATECCTVGGTHEFGADRSVTATSSSKELHKGSRLKAALQAALLKRPQIHKKKDLHDQSDTVLKCKVSSQDQVEVSASNTLKNGISVEETNVRYERQNSRFETSKCLSANDLNHVKTDLCSQLKNSNSISPSSEKPAVRDLLNHALAISSVTSEMSAIPEYKYIWQGIFEVTRSGKSPELYTGIQAHLSSCASPKVLDAVNKFLPEISLHEVSRLSTWPSHFHQCGAKEDNIALYFFAKDIESYERHYKSLLDHMIRHDLALKGFIDGVELLIFASNQLPENSQRWNMLFFLWGIFKGRRVNHSDSVKNIVLPSLNVAVPNEKDFPTAVMTVSDTRCSPVRIDEESIACGKACSELPATSIDKGHIMLSKDFDVKDTIFDHTHLGSQVNFDRQDSRINNTKSSSRISTNVIQPCREMNTIDSSLKEKGSLSEHGLHRESKSPEDAGTIVRAMIVETKPNYGISVKQENSMSSRILYVDNQEILTANSSTLKDKISERTNNDENQRRPKRKEREDDLNIKVEATDQGDLAIEAVNCRLPNDIKVEHIDHSNTVIEAPAASCQEMRRTKMNVKLEDTDSSSKMQSGFTGIYGCYNSVARDSFTGSSASLVNDFGSSSSVEDKGCKESCDEKIIHEDLGTMEKTFFPIDTHNTTDSRLVLSSMSLKRPHECGEKFEVGIPSLELALGGEMKQSKNGTLPFLAGKADKKNNQENTPDCLETKQEDDDSVAASLSLSLSFPSSNKETTIPASKDEHHMNSSLLLFGRFTDK 1378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01070 1378 PANTHER - 1 384 - -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 410 441 - -
Tsu06g01070 1378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 316 IPR013083 -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 1105 1125 - -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 1318 1333 - -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 1309 1333 - -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 1106 1125 - -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 197 222 - -
Tsu06g01070 1378 PANTHER - 384 1129 - -
Tsu06g01070 1378 PANTHER - 1130 1355 - -
Tsu06g01070 1378 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 384 1129 - -
Tsu06g01070 1378 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1130 1355 - -
Tsu06g01070 1378 SUPERFAMILY FYVE/PHD zinc finger 243 306 IPR011011 -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 348 389 - -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 1038 1058 - -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 1038 1056 - -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 49 65 - -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 190 222 - -
Tsu06g01070 1378 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 384 - -
Tsu06g01070 1378 MobiDBLite consensus disorder prediction 46 65 - -
Tsu06g01070 1378 SMART PHD_3 255 302 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01070 Tsu-Chr6 9740157 9748852 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01070 - - mtr:MTR_0001s0570 2065.43