Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01060 ATGGCTGTTGAGACTTCTGATAAACCAAACTTGCCCAAAAATGCTGATTttgatgacgatgatgatgatatgcCGATAACTTTTAAGAGAATCGCTAAGAAGAGTCCGTTGTATTCTGAAGTAAAGAAAACAAGTTCTCAAAGTCACGAGGGACAGTCAAAAAGACAGATTACTGATGGGCCTTCTTCAAATGGTCAAAATTCTAAGCCATCATCAATGAAGCCATCTGCTGGGATCTCGAAAACACCAAATTCGGCGGCTGTTAAGACCTCCTCTAATAAGTCACCAGTagcaaattcaaaatcaaagcCTGTTCTGGGGCAGAAAACAAGCATTGATGTTAAGAAAGGAACAAAAGTTATTGAAAACACACCTAAAGGTAAATGTGAAGATTCAGAGGATGACGATGATGATAAACCATTGAGTTCTAAGTGGAACATGAAATCTAATCATGATAACAAAGTAGTAGCACCTGTTGTTATGAAGAAATCTTCTGAAGACTcggatgatgaagatgatgatgtcCCTCTGTCAGCAAAGTTATTACGGAATTGTAATTCGGGAACATCTAGCAAGAACTATGATGACTCTGATAAGAAACCTATTTCAAAAGTTCAGAAAGATCGGCAAAATGGTTCCAGCACAAGTAATAAACAGACAAAGCCAACTACGCTACCTGCTAAGAGAGAGCTAGAAAATTCTGATTCGGTGCACTCTTCAGTTAAGAAGTCAAAGGTCTCAGATTCAGCTGCTTCTATCAAAACTAAGCAAGTCACTGTCAAACCATCTGAGACTAAGACTCaggaggaagatgatgatgaacttcCCATTTCCCATAGATTTAAGAAGTCAGCTGATAAACCATCTTCCACAAAGAAAATAGTGACAAAGGTTACTAAAGTTAATAAGTCTGGTTCAACATCTTTTAAGAAACAGACCAAGAGCAAAAAGACCAATAGTAAACAGACCAAGAACAAGTCGAAAAAGTCCGGCCGTGACTCAGAATATTCCAAATCTTCAAAACTTCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACGTTGGTTCACAATGGTGTCATTTTCCCTCCTCCTTACCAGCCCCATGGTGTAAAAATGCTTTATAAGGGGAAGCCTGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCGGTTATGCGAGATACAGATTACATGCAGAAAGATAAGTTCAAGGAAAATTTCTGGAATGACTGGCGAAAGTTGCTAGGAAGAAATCATGTAATTCAGAACTTGAAAGATTGTGACTTCACACCAATCTATGACTGGGCCCAAagtgaaaaggaaaagaagaaacaaatgacGACAGAAGAAAAGAAAGCTCTGAAGGAAGAAAAATTGAAGCAAGAGGAGAAATACATGTGGGCTATTGTTGATGGTGTTAAAGAGAAGGTTGGAAATTTCAGAGTTGAACCTCCAGGTTTGTTCCGTGGCCGTGGAGAGCATCCCAAGATGGGAAAATTGAAAAAACGCATTCATCCAAGGGACATCACAATTAATATCGGAAAGGATGCACCAATTCCTGAATGTCCTATTCCTGGTGAACGCTGGAAGGAGATAAGACATGACAATACAGTTACATGGTTATGCTATTGGAATGACCCAATTAATCCAAAGCTATTCAAGTATGTGTTTCTGGCAGCTAGTAGTTCCTTGAAGGGTCAAAGTGACAAGGAAAAGTATGAGAAGGCTAGATTGTTGAAGGTGCTTTCATGCTTTCTTTGTTAG 1779 0.3687 MAVETSDKPNLPKNADFDDDDDDMPITFKRIAKKSPLYSEVKKTSSQSHEGQSKRQITDGPSSNGQNSKPSSMKPSAGISKTPNSAAVKTSSNKSPVANSKSKPVLGQKTSIDVKKGTKVIENTPKGKCEDSEDDDDDKPLSSKWNMKSNHDNKVVAPVVMKKSSEDSDDEDDDVPLSAKLLRNCNSGTSSKNYDDSDKKPISKVQKDRQNGSSTSNKQTKPTTLPAKRELENSDSVHSSVKKSKVSDSAASIKTKQVTVKPSETKTQEEDDDELPISHRFKKSADKPSSTKKIVTKVTKVNKSGSTSFKKQTKSKKTNSKQTKNKSKKSGRDSEYSKSSKLLPSSGDGQKKWTTLVHNGVIFPPPYQPHGVKMLYKGKPVDLTPEQEEVATMYAVMRDTDYMQKDKFKENFWNDWRKLLGRNHVIQNLKDCDFTPIYDWAQSEKEKKKQMTTEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPRDITINIGKDAPIPECPIPGERWKEIRHDNTVTWLCYWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARLLKVLSCFLC 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01060 592 MobiDBLite consensus disorder prediction 115 145 - -
Tsu06g01060 592 MobiDBLite consensus disorder prediction 291 313 - -
Tsu06g01060 592 PANTHER DNA TOPOISOMERASE I 164 577 - -
Tsu06g01060 592 PANTHER DNA TOPOISOMERASE 1 ALPHA 164 577 - -
Tsu06g01060 592 MobiDBLite consensus disorder prediction 263 290 - -
Tsu06g01060 592 Gene3D DNA Topoisomerase I, domain 2 348 563 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Tsu06g01060 592 MobiDBLite consensus disorder prediction 243 262 - -
Tsu06g01060 592 CDD Topoisomer_IB_N 352 564 - -
Tsu06g01060 592 SMART topeu 492 591 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Tsu06g01060 592 MobiDBLite consensus disorder prediction 1 351 - -
Tsu06g01060 592 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 352 563 IPR008336 GO:0003677|GO:0003917|GO:0006265
Tsu06g01060 592 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 350 565 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Tsu06g01060 592 MobiDBLite consensus disorder prediction 39 107 - -
Tsu06g01060 592 Gene3D - 368 451 IPR013034 GO:0003917|GO:0006265
Tsu06g01060 592 Coils Coil 441 469 - -
Tsu06g01060 592 MobiDBLite consensus disorder prediction 207 230 - -
Tsu06g01060 592 MobiDBLite consensus disorder prediction 337 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01060 Tsu-Chr6 9669669 9673997 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01060 K03163 - gmx:100799837 734.947