Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01045 ATGAATACCCTTCTTTCAAAATCCAAACTTTCAACTCCATCATCAAGTTCTAGAAGCAGTGGTAGTAGCTGTAGCAGCAGCAGTGAAAGCAATGAAAGCTATAACATATTAGAACTTCAAGTTCAACATATCAACTATGAattaccaccaccaccaccatgcCAATCATTTTCGCATCGATCATTGGCGATTCTTTCAGGACATGTTGGATCAGTTTCATGTTTAGCTTTATGTGGTGAATTCATATTGAGTGCCTCACAGGGTAAAGACATCATAGTATGGCAACAACCAGATTTAAGGTTGTTTGCCAAATTCGGACAAGGCGATGGATCTGTGAAAGCACTTGCTACTATTGGTAACAAGGTTTTCACAGCTCATCAAGATAGTAGAATTCGTTGTTGGAAAGTGTCGAGGAGTTCTGAAAATGTTTTCAGACTCGTTGACACGCTTCCAACAACGAAGGACTATTTGGGTAGATTTATGAAACATAGTAATTATGTTCAAACTAGAAGACATCATAAGAGATTATGGATTGAACATGCTGATAGTATTTCTTGTTTAGTTGTTCATAATGGGTTGATTTATTCAGGTTCATGGGATAAAACACTTAAAGTTTGGAGTGTTTCTGATTTGAAGTGTTTGGAATCAATTAAAGCTCATGATGATGCTATCAATGGGTTGGTAGCATGTAAAGGAATTATTTATTCAGCTTCTGCAGATGGAAAAATTAAAGCTTGGGGAAAAGACGGTAAAAATTTGCATTCGTTAAAGGGTATTCTGAAAGGTCATAACGACGTTTCGTTTAATTCTGTAGTTGTTTCGGATGACGGGAAATGGGTTTATGGAGGTGGTTCAGATGGTTATGTAATGTGTTATGAAAAGATTAATGGTTTAGAAAATATTGAGAATTGGAAAATGGTTTTTGAGAAAAAAGCACATGAAATGGCTGTTTTGTGTATGTGTTTGATGAGTGATTATTTGTGCACAGGTTCAGCAGATAAAAGTATAGGTATTTGGAAAAGAGAATCTTttggtaaaatttgtaaagttaGTGTTATAATTGGACATGATGGACCTGTGAAGTGTTTGCAAGGTTCATTGTCTAATAGAATTGGTGATGGATTTTTGTTGTATAGTGGAAGTCTTGATAGAAGTGTGAGAGTTTGGTGGGTTTCAAAGTATGATAAAACACAAGTGGAGGAGAAAAAATTTACAACACTTGGTGGTACATTGATGCAGGGCTGA 1245 0.347 MNTLLSKSKLSTPSSSSRSSGSSCSSSSESNESYNILELQVQHINYELPPPPPCQSFSHRSLAILSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGDGSVKALATIGNKVFTAHQDSRIRCWKVSRSSENVFRLVDTLPTTKDYLGRFMKHSNYVQTRRHHKRLWIEHADSISCLVVHNGLIYSGSWDKTLKVWSVSDLKCLESIKAHDDAINGLVACKGIIYSASADGKIKAWGKDGKNLHSLKGILKGHNDVSFNSVVVSDDGKWVYGGGSDGYVMCYEKINGLENIENWKMVFEKKAHEMAVLCMCLMSDYLCTGSADKSIGIWKRESFGKICKVSVIIGHDGPVKCLQGSLSNRIGDGFLLYSGSLDRSVRVWWVSKYDKTQVEEKKFTTLGGTLMQG 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01045 414 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Tsu06g01045 414 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Tsu06g01045 414 PRINTS G protein beta WD-40 repeat signature 194 208 IPR020472 -
Tsu06g01045 414 MobiDBLite consensus disorder prediction 1 30 - -
Tsu06g01045 414 Gene3D - 53 166 IPR015943 GO:0005515
Tsu06g01045 414 SUPERFAMILY WD40 repeat-like 59 399 IPR036322 GO:0005515
Tsu06g01045 414 Pfam WD domain, G-beta repeat 179 207 IPR001680 GO:0005515
Tsu06g01045 414 Pfam WD domain, G-beta repeat 258 292 IPR001680 GO:0005515
Tsu06g01045 414 Pfam WD domain, G-beta repeat 350 389 IPR001680 GO:0005515
Tsu06g01045 414 PANTHER OS01G0946100 PROTEIN 6 403 - -
Tsu06g01045 414 Gene3D - 167 408 IPR015943 GO:0005515
Tsu06g01045 414 CDD WD40 61 389 - -
Tsu06g01045 414 SMART WD40_4 98 135 IPR001680 GO:0005515
Tsu06g01045 414 SMART WD40_4 58 95 IPR001680 GO:0005515
Tsu06g01045 414 SMART WD40_4 170 207 IPR001680 GO:0005515
Tsu06g01045 414 SMART WD40_4 253 293 IPR001680 GO:0005515
Tsu06g01045 414 SMART WD40_4 346 390 IPR001680 GO:0005515
Tsu06g01045 414 SMART WD40_4 303 340 IPR001680 GO:0005515
Tsu06g01045 414 SMART WD40_4 210 247 IPR001680 GO:0005515
Tsu06g01045 414 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 6 403 IPR045182 -
Tsu06g01045 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 216 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01045 Tsu-Chr6 9533809 9535124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01045 167 395 Miscellaneous Gene Families AT5G08390 20.168 9.83e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01045 - - gmx:100775295 587.8