Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01044 ATGAGTAATCCTAagGTCCTACTATTTGGCTCATTTACTGAAGATGAAACTAGATCATTGAGGGTAAAGAAGTCTTCTGGGAGAAATGAAAAGTCTGTCGATAAGAATCAGTTGCAATTTGGTTCTTTGAATTCTGTTAATGTTGTTGAATCAAGCAACCTGCCAAACTCATCAAAAGCCCCAAATAGTGCTGCTCTCGCCGATTCTCAGAAACTTAACATTGTGAACGGTGTTGGTGCTAATTTGCCTCGAGTATCAGAAAGTGCTAATTTGCCTTTGCCTCGAGTATCAGAAAGTGCTAATTTGCCTCTGCCTCTAGTATCAGAAAGTGCTAATTTGCCTCGAGTATCAGAAACTATAAAAGAGAATGGCAACATTACTAATTTCTCTCTCAGTAGTTCCTCAAGTGTCACTATTGCAAACAAAGTTGTCGAAAATAGTGTGTGCTCGGTTCCACTAATTGATCAAAACGGTACTGCAAATAAGTTTACAAATTTGAGCCTTGATGCTTCTGAGGCTGAAAGTGTGAAGAATGTGTTCACAAATGGAAGTCATGATGACTCTTCATCAAAGTTATTTGATGAAGACTTGAAGAAGGCACCTAATGGGCATGCTGTTATTCTTATTAAGGATCTTCAGCCTCGAGGCCTTATTAATTCCGGGAATTTATGCTTTCTTAGTGCAACCGTGCAGGCTCTCTTGGCTTGTTCTCCTTTTGTTCAGCTTTTGCAGGAATTAAGAACTCGCAACATTCCTAAGGTTGGCTATCCCACGCTGAAAGCATTTGCTGAGTTCGTAACTCAATTTGACATGCCAAGtggaataaaattaaagaagaaagATACCGATTCTTTTGAGTTTGGACGGGCATTTTGCCCTGTTATGTTTGAAGATGTTCTGAAAAATTTTACTCCGGATGTGCCAAATAGCATTTCAGGAAGACCAAGGCAAGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGACGAATTACTGAAGCTTGAAGGACAGTCCTCAAGTCTTAATGGTAGCAAATCTTTTCTAGTTTCTTCTGTGGAAGATGATGAATGGGAAACAGTGGGACCAAAGAATAAATCTGCTGTTACAAGGACTCAAAGCTTTATTCCCTCAGAATTAAATGATATTTTCGGAGGACAGCTCCATAGTTTGGTGAAAGCTAAAGgAAAAAGTTCTGCCACTGTTCAACCATATCGCTTGCTCCATCTTGACATTCACCCTGATGCTGTTCACACTATTGAGGATGCTTTGCACTTGTTTTCTGCACCAGAAACTCTTGAAGGGTACCGAGCATCTGTCACTGGAAagGCGGGGACTGcaaaaaaatctataaagaTACAGACACTTCCTAAAGTACTGATATTGCACCTGATGCGTTTTGGTTATGGAAGCCAGGGAAGCACCAAGTTGCTTAAGCCCGTGTACTTTCCTCTTGAGTTGGTATTGGGTCGTGACCTGCTTGCTTCACCATCTACAGAGGGTCGAAAATATGAACTTGTTGCTACAATTACTCATCATGGAAGGGAGCCTTCGAAAGGCCACTACACAGCTGATGCTCAATACCCCAATGGTCAGTGGCTACGATTCGATGATGCATCTGTCTTTGCTATTGGAGCAAATAAGGTGCTGCATGATCAGGCCTATGTTCTTTTCTACAAACAGATACAAGCATAA 1704 0.402 MSNPKVLLFGSFTEDETRSLRVKKSSGRNEKSVDKNQLQFGSLNSVNVVESSNLPNSSKAPNSAALADSQKLNIVNGVGANLPRVSESANLPLPRVSESANLPLPLVSESANLPRVSETIKENGNITNFSLSSSSSVTIANKVVENSVCSVPLIDQNGTANKFTNLSLDASEAESVKNVFTNGSHDDSSSKLFDEDLKKAPNGHAVILIKDLQPRGLINSGNLCFLSATVQALLACSPFVQLLQELRTRNIPKVGYPTLKAFAEFVTQFDMPSGIKLKKKDTDSFEFGRAFCPVMFEDVLKNFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELLKLEGQSSSLNGSKSFLVSSVEDDEWETVGPKNKSAVTRTQSFIPSELNDIFGGQLHSLVKAKGKSSATVQPYRLLHLDIHPDAVHTIEDALHLFSAPETLEGYRASVTGKAGTAKKSIKIQTLPKVLILHLMRFGYGSQGSTKLLKPVYFPLELVLGRDLLASPSTEGRKYELVATITHHGREPSKGHYTADAQYPNGQWLRFDDASVFAIGANKVLHDQAYVLFYKQIQA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01044 567 Pfam Ubiquitin carboxyl-terminal hydrolase 216 562 IPR001394 GO:0004843|GO:0016579
Tsu06g01044 567 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 565 - -
Tsu06g01044 567 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 507 525 IPR018200 GO:0004843|GO:0006511
Tsu06g01044 567 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 215 565 IPR028889 -
Tsu06g01044 567 SUPERFAMILY Cysteine proteinases 212 563 IPR038765 -
Tsu06g01044 567 Gene3D Cysteine proteinases 205 565 - -
Tsu06g01044 567 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 216 231 IPR018200 GO:0004843|GO:0006511
Tsu06g01044 567 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 565 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01044 212 566 Miscellaneous Gene Families AT2G24640 29.235 8.74e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01044 K11841 - gmx:100799656 758.829