Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01040 ATGAGTTTCTTTGAACAACAACACAACAACATTAAATTCCTCAAAGTCttcattttattgttgtttcttAGTTGGTTTAACTCTTGTCTTTCCAACATCCCTTTTACATTAAAAACACTTCCATTTAAAGGaaatttgagttttgatgaAATTAGTCTTAACAAAGTATCAAAAGATTTTGGTAATAGGTATCAATATCATCCATTAGCAGTGCTTAATCCAAAATCAGTTTCTGATATTTCAACTACAATAAAACATATATGGCAAATGGGAGATAGTTCTTATCTCACTGTTGCTGCAAGAGGACATGGACATTCACTTCAAGGACAATCACAAACTCATGGAGGAATTGTGATTAACATGGAATCACTTATGTTACCTGAAATGCAGATACATGTTGgaaattcttcttctttttcttatgtTGATGTCTCTGGTGGTGAGTTGTGGATAAATATCTTGCATGAGACTTTAAGATATGGATTAACACCAAGATCATGGACAGATTATTTGCATCTAACTGTTGGTGGAACTCTCTCCAATGCCGGTGTTAGTGGTCAAGCATTTAAACATGGTCCTCAAATTAGTAATGTTCAGCAGCTTGAGATTGTTACagGAACAGGGGAGGTACTAAATTGTTCTAAAGAACAGAATGAAGAACTCTTTCATAGTGTTCTTGGAGGGCTAGGCCAATTCGGCATTATAACGCGCGCGAGAATTCTCCTTGAACCAGCACCAACCATGGTACTAATAATCactaatacatatattaatcaagcacatttaattttgattagtaTTTTGTTAGCACCAATTGACatcaaacaaaaattgtattgttTGTGTCAGGTAAAATGGATTAGAGTACTATACTCGGATTTCGCGGCATTCACTAAAGACCAAGAGAGATTAATATCTGAAGAAAATGCATTTGATTACATTGAAGGATTTGTTATAATAAACAGAACTGGTTTACTAAATAATTGGAGATCATCTTTCAATCCACAAGATCCAGTTCAAGCTAGTCATTTCAATTCAGATGGAAAAACTCTCTTTTGCTTAGAATTAGCCAAATATTTCAACTTTGAACAAATAGATATAGCAAATCAGGTTTGTGACCATCTCAATCTAGAGATtctttatttttacaaaaatatatatatctag 1167 0.3059 MSFFEQQHNNIKFLKVFILLLFLSWFNSCLSNIPFTLKTLPFKGNLSFDEISLNKVSKDFGNRYQYHPLAVLNPKSVSDISTTIKHIWQMGDSSYLTVAARGHGHSLQGQSQTHGGIVINMESLMLPEMQIHVGNSSSFSYVDVSGGELWINILHETLRYGLTPRSWTDYLHLTVGGTLSNAGVSGQAFKHGPQISNVQQLEIVTGTGEVLNCSKEQNEELFHSVLGGLGQFGIITRARILLEPAPTMVLIITNTYINQAHLILISILLAPIDIKQKLYCLCQVKWIRVLYSDFAAFTKDQERLISEENAFDYIEGFVIINRTGLLNNWRSSFNPQDPVQASHFNSDGKTLFCLELAKYFNFEQIDIANQVCDHLNLEILYFYKNIYI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01040 388 PANTHER GULONOLACTONE OXIDASE 18 257 - -
Tsu06g01040 388 PANTHER GULONOLACTONE OXIDASE 283 375 - -
Tsu06g01040 388 SUPERFAMILY FAD-binding/transporter-associated domain-like 42 244 IPR036318 GO:0050660
Tsu06g01040 388 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 18 257 - -
Tsu06g01040 388 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 283 375 - -
Tsu06g01040 388 Gene3D - 283 385 IPR016170 -
Tsu06g01040 388 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 283 381 IPR015345 GO:0009690|GO:0019139|GO:0050660
Tsu06g01040 388 Gene3D - 133 247 IPR016169 -
Tsu06g01040 388 Gene3D - 26 132 IPR016167 -
Tsu06g01040 388 Pfam FAD binding domain 68 214 IPR006094 GO:0050660
Tsu06g01040 388 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 68 103 IPR006093 GO:0016491
Tsu06g01040 388 ProSiteProfiles PCMH-type FAD-binding domain profile. 64 245 IPR016166 GO:0071949
Tsu06g01040 388 SUPERFAMILY FAD-linked oxidases, C-terminal domain 284 369 IPR016164 GO:0003824|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01040 Tsu-Chr6 9473330 9476711 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01040 K00279 - gmx:100808619 515.768