Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01038 ATGGATGGTTATGAAGCTACTAGGATAGTATTTTCAAGGATCCAGAACATGGACCCTGAAAATGCTTCCAAAATTATGGGTGTACTTTTGATTCAAGACCATGGTGAGAAAGAAATGATAAGATTAGCATTTGGTCCAGAATCACTTATTCATACAGTGATTTTCAAAGCTAGAAAAGAGTTAGGACTATCTTGTTCTAATAACTCACCACCAACACCTTCAAGTTCAACTCCTCCATCACCATCACCTTTCCTTTCAAGACAAAATTCAACTTCTTCAAGACTTAATGGTTTCAACCTTCCTCCTTCTTTAACCATACCAAACCCTTCTTGGGGAGGAGCTACTATGTCTGAATATCAGAACCATGATGATTTGATTATGAGTCCTAACAATTTAGTTATAGGGTCTTCTTCAAATACTTCACCTTTTTATCCAAATGGAAGTTCAGATCCAGTTGATGATTTTCAACTTCAAGACCAACTTTCTTTCTTGAATGATGGTTCTGATTCtagtactctttttccttcatatGGTTATGGAGGTAATTCTCTTCATAGGAGAAGTTGTTCTGTCAATGATGCTTGTTTAGGTTCTGAGGATCCAAATTCTGGTTTAGGATGGAAACCTTGTCTTTATTTTGCTAGAGGGTACTGTAAAAATGGTACTAGTTGTAGGTTTCTTCatggtgatgttgttgatgGTGGTTCTACTACAATTGTTGGTTCTCCTAACAAAGTTGAGATAATGGATCAGTGTCATCATCATGAACTCTTGAGATCTAAATCTACTCATCAACAAAGATTGGCTGCTGCTTCTCAACTCATGGCCTCTAACTCTTTCCCTTACTCACCAAAGTGCATGAATTTCCTTTTACAGCAGCAACAAAATGATACTCAAAGGGCAGCAGCTGCAGCACTAATGATGAGTGAGGATTTGCACAAATTTGGAAGATCAAGACTTGAAAgaaatgatttttctttgaataGTCCTACAGGAATGATTAATCCGGCTTCAAGACAGATCTACTTGACTTTCCCAGCTGATAGTACTTTTAGAGAGGAAGATGTTTCCAATTATTTCAGTATTTATGGTCCTGTTCAAGATGTAAGGATTCCATATCAACAGAAGCGTATGTTTGGCTTTGTTACCTTTGTTTATTCTGAGACAGTGAAGCTCATTTTATCTAAAGGAAACCCTCATTTTGTTTGCGATGCTCGTGTACTTGTTAAGCCTTACAAGGAGAAGGGAAAAATTCCAGACAAGAAGCAGCTGCAGCAGGTTGATAGAGATTTTTCACCTTGTGGCACTCCTACTGGACTTGATGCTAGAGACCAATATGATCTTCAACTTGGTGGAAGAATGTTCTATAACACTCAAGACATGTTGTTGAGGAGGAAGCTAGAAGAAGCTGATTTACAGCAAGCTCTTGAGCTGCAAAGTAGGAGACTAATGGGTTTGCAACTTCttgacatcaagaagcaacatCACCGCGCATTTTCCACTGGAAGTCCAATTCCTTCTCCTACTCAATCTCCTAACATGTTCAATCAAAGTCTTGTTCTTCCTTTCCACAGAAGCTCAGAGTCCCCTGAGGATAATGGTCCAAGTTATGTTCCAGCTAGTACTACTACTGCTTCGGTTTCTGCTGGTCAACCATCGGTCAACGGTTATATCGGCAAGGAAGTAATGGCCAATGGAGAGAATGGAAAtagtgaaaatgaaaacaatggAAATGGCAAGCAAAGCTCAAGCCAAGATGAAGAGCTTGATTTACAAGAATGTTTGGACTTGGAACATAACCTTCCTGATAGCCCTTTTGCTTCACCTACCAAAGCTAATGGAAGTGACTTAGTAGCACCATTCTCTAATGGATCTTATGAGACCATTGATTCAGATGCATCTACTAATAACTCTAAGTTTGGAACTAGTAAATTACATCCTACATCAGCATCCTCTCTTGATATGGGCACTTTTAAATCCTTTAACTGCCAACTACCAAGGTTCTCTTCTGGCCATGGTACTATTGGGATGTTTGCCGGCACCGGTGGACCGATCGGCATTTAG 2064 0.3784 MDGYEATRIVFSRIQNMDPENASKIMGVLLIQDHGEKEMIRLAFGPESLIHTVIFKARKELGLSCSNNSPPTPSSSTPPSPSPFLSRQNSTSSRLNGFNLPPSLTIPNPSWGGATMSEYQNHDDLIMSPNNLVIGSSSNTSPFYPNGSSDPVDDFQLQDQLSFLNDGSDSSTLFPSYGYGGNSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGDVVDGGSTTIVGSPNKVEIMDQCHHHELLRSKSTHQQRLAAASQLMASNSFPYSPKCMNFLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPTGMINPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYSETVKLILSKGNPHFVCDARVLVKPYKEKGKIPDKKQLQQVDRDFSPCGTPTGLDARDQYDLQLGGRMFYNTQDMLLRRKLEEADLQQALELQSRRLMGLQLLDIKKQHHRAFSTGSPIPSPTQSPNMFNQSLVLPFHRSSESPEDNGPSYVPASTTTASVSAGQPSVNGYIGKEVMANGENGNSENENNGNGKQSSSQDEELDLQECLDLEHNLPDSPFASPTKANGSDLVAPFSNGSYETIDSDASTNNSKFGTSKLHPTSASSLDMGTFKSFNCQLPRFSSGHGTIGMFAGTGGPIGI 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01038 687 SMART c3hfinal6 206 230 IPR000571 GO:0046872
Tsu06g01038 687 ProSiteProfiles Zinc finger C3H1-type profile. 204 231 IPR000571 GO:0046872
Tsu06g01038 687 MobiDBLite consensus disorder prediction 65 101 - -
Tsu06g01038 687 SUPERFAMILY CCCH zinc finger 207 229 IPR036855 GO:0046872
Tsu06g01038 687 Gene3D - 344 417 IPR012677 -
Tsu06g01038 687 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 675 - -
Tsu06g01038 687 CDD RRM_AtC3H46_like 341 410 IPR034365 -
Tsu06g01038 687 Gene3D - 198 298 - -
Tsu06g01038 687 SUPERFAMILY RNA-binding domain, RBD 351 429 IPR035979 GO:0003676
Tsu06g01038 687 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 675 - -
Tsu06g01038 687 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 415 IPR000504 GO:0003723
Tsu06g01038 687 MobiDBLite consensus disorder prediction 81 101 - -
Tsu06g01038 687 MobiDBLite consensus disorder prediction 566 585 - -
Tsu06g01038 687 MobiDBLite consensus disorder prediction 524 619 - -
Tsu06g01038 687 SMART rrm1_1 340 410 IPR000504 GO:0003723
Tsu06g01038 687 MobiDBLite consensus disorder prediction 524 553 - -
Tsu06g01038 687 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 351 396 IPR000504 GO:0003723
Tsu06g01038 687 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 209 229 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01038 Tsu-Chr6 9450955 9456079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01038 - - gmx:100801807 1007.28