Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00944 ATGTCGTTTTCATCAGAGAAGAAAAATCATCACCATTCTCGGAAagaaaaccctaaccctaaccctaatccAACTTCACCATTGAAGAAAAGAGGAACAAGATGGTCAGATTTATGGCTAAAACACACCACAAAATCAAAGCCTTTAAACCaaattgttgttgctgctgcaaTGCAACAGCTTCAATCTCTTTCATCACCTagaaaatcaaacaacaatAATGTCAACACATTAATCCCTAATTTCTCAATCATTGATCAAACCCTTTTGTTATCTGATGAACTTCTTCTCAAGATTCTCTCTAAGTTACCAGATTCACagagaaattcaaattcattagTTTGTAAAAGATGGTTGAATCTTCAAGGTAGATTGGTTCGTTCGATTCGGATTCTTGATTGGAATTTTGTTTTATCTGGTAGGTTAATTCATAGATTCCCAAATCTTAATCATGTTGATTTGATTCCTGGCTGTTTGATTTTAACACAaagttcaaatatttttttgagtaGTAATGTTTTGAATATGCATATTGATTCTGGGTCTTCGCCGAATTGGTTTTTTTGTGAGGAGAATATGCTTCCTGTTGAGGTTATTGATAATGGATTAAGTGCTTTGGCTAATGCTTGTCCTAATTTGAGAAGGGTTCAAGTGATTGGTGCTAGTGAAATGGGTTTGCTTAGTGTTGCTGAGGAGTGTCCTACATTGCAGGAATTGGAATTGCAAAAGTGTAGTGATAATGTGTTACGTGGGATTGCAGCGTGTGGGAATTTGCAGATTTTGAAATTGGTTGGTAATGTTGATGGTTTTTATGGTTCGGTTGTTTCTGATATCGGTTTGACTATTTTAGCTCAAGGTTGTAAGAGACTTGTGAAGCTTGAGCTTTGTGGTTGTGAAGGTAGTTTTGATGGGATTAAGGCTATTGGTAAGTGTTGTCAAATGTTGGAGGAGTTGACTTTGTCTGATCATAGGATGGATGATGGATGGATGGCTGGAGTTTCGTTTTGTGAGAATTTAAAGACGTTGAGGTTAACGTCTTGTAAGAAGATTGATTTGAATCCGGGACTCGAAGAGTATTTGGGTTCTTGTCCTGCACTTGAAAGGTTGCATTTACAAAAGTGTCAGTTGCGGGATAAGAAGAGCATTTCCGCTTTGTTTTCTGTTTGCAGGGCTGCTAGGGAGATTATTATTCAGGATTGCTGGGGATTGGATAATGGCTTGTTCGGCTTTGCAACTGTTTGCAGGCGCGTAAAATTGCTTTACTTAGAAGGATGCTCATTGCTAACAACAGAAGGTTTGGAATCTGTAATACATTCGTGGAAGGAACTTCAAAGCCTAAGAGTAGTCTCATGTAAGAATATAAAGGATAGTGAAATCTCTCCTTCACTTGCAACCTTATTTACCACTCTCAAAGAATTGAAATGGAGGCCAGATACCAAATCACTTCTTCCATCAAGTCTTAGAGGGATAAGTATGGGAAAGAAAGGtgggaaattttttaaaaggacaTGA 1512 0.3492 MSFSSEKKNHHHSRKENPNPNPNPTSPLKKRGTRWSDLWLKHTTKSKPLNQIVVAAAMQQLQSLSSPRKSNNNNVNTLIPNFSIIDQTLLLSDELLLKILSKLPDSQRNSNSLVCKRWLNLQGRLVRSIRILDWNFVLSGRLIHRFPNLNHVDLIPGCLILTQSSNIFLSSNVLNMHIDSGSSPNWFFCEENMLPVEVIDNGLSALANACPNLRRVQVIGASEMGLLSVAEECPTLQELELQKCSDNVLRGIAACGNLQILKLVGNVDGFYGSVVSDIGLTILAQGCKRLVKLELCGCEGSFDGIKAIGKCCQMLEELTLSDHRMDDGWMAGVSFCENLKTLRLTSCKKIDLNPGLEEYLGSCPALERLHLQKCQLRDKKSISALFSVCRAAREIIIQDCWGLDNGLFGFATVCRRVKLLYLEGCSLLTTEGLESVIHSWKELQSLRVVSCKNIKDSEISPSLATLFTTLKELKWRPDTKSLLPSSLRGISMGKKGGKFFKRT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00944 503 Pfam F-box domain 90 121 IPR001810 GO:0005515
Tsu06g00944 503 PANTHER F-BOX PLANT-LIKE PROTEIN 68 484 - -
Tsu06g00944 503 MobiDBLite consensus disorder prediction 1 31 - -
Tsu06g00944 503 SMART LRR_CC_2 233 255 IPR006553 -
Tsu06g00944 503 SMART LRR_CC_2 363 388 IPR006553 -
Tsu06g00944 503 SMART LRR_CC_2 414 439 IPR006553 -
Tsu06g00944 503 SMART LRR_CC_2 287 311 IPR006553 -
Tsu06g00944 503 PANTHER UNCHARACTERIZED 68 484 - -
Tsu06g00944 503 SUPERFAMILY RNI-like 247 474 - -
Tsu06g00944 503 Gene3D Ribonuclease Inhibitor 245 480 IPR032675 -
Tsu06g00944 503 Gene3D - 87 124 - -
Tsu06g00944 503 SUPERFAMILY RNI-like 136 266 - -
Tsu06g00944 503 MobiDBLite consensus disorder prediction 1 17 - -
Tsu06g00944 503 SUPERFAMILY F-box domain 85 137 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00944 Tsu-Chr6 8546745 8549399 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00944 K10268 - gmx:100812193 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00944 06 8546745 8549399 Tsu06g00944 06 8546745 8549399 ECH