Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00920 atgaCAGGAAAGATtgtagaaatatcaaaattatcatTGTTGTTAATAATGATAATGGCTACAATGGCAAAATCAGTTTCACTTAACTATAGTGATGCATTGACAAaaagcattttattttttgaaggtCAAAGGTCTGGTAAATTGCCACCTTCGCAACGTATAAAATGGAGAAAAGACTCAGGCCTTAATGATGGACAAGATATTCATATTAATATGGTTGGTGGATACTATGATGCTGGTGACAATGTAAAATTCCATTTTCCTATGGCATTTACAACCACAATGCTAGCTTGGAGTGTGATAGAATTTGGAGATCATATGGGATCAGATTTGCAACATGCTTTGGAAGCAATCCGTTGGGGAACCGATTATTTCCTCAAAGCCACCAAAATACCAAATATTGTTGTAGCACAAGTTGGAAATCCCATTAGTGATCATGATTGTTGGGAAAGACCGGAAGATATGGACACTTCTAGACAATCTTATTATTTGACTCAAAAGAAGCCTGGTTCAGAGGTTTCGGCTGAGATTGCGGCTGCACTTGCGGCGTCATCTATTGTATTTCGCAAAATCGACGATAGATATTCAAATATGCTTCTTGCTAGGGCTAAACAGGTGTTTGACTTTGCAAATAATCACCGTGGCTCTTACAATGATTCTATAGGGGCTGGAGTATGTCCTTTCTACTGTGATTTCAATGGCTATATGGATGAGTTGATTTGGGGTGCAGCATGGTTGTATAAGGCTTCTAATGATCAAAATTATTGGAACTTtgtaaaatcaaatatacaatCCATAGAATCCTCTATAGTTGTTAGAAATATCAAGGGTTTTAAAGTTCTAGCTAATGGTGGTAGTTTTAGTGAATTTGGATGGGATTCTAAGCATGCTGGCATTAATGTACTTGTTTCTCAGTGGGTGATGAACAATCCATCAAACCAAAGTCCTTTTGTTCCTAATGCAAACAATCTTATATGTTCTTTGTTGCCTAATTCACCAACCAAATCAGTCACATACTCCAAAGGTGGGCTTCTATTCAAAGTTGGATCAAGTAACCTACAACATGCAACAtcactttcttttttgttaattgtttatGCTCGCTACATGCAAGCCAATAACAAAGTGGTACAATGTGGAAATGTAATTGCTAAACCATCTGATCTCACTAATCTTGCAAAAAGCCagGTTGATTATATTCTAGGAAACAACCCATTAGGAATGTCGTACATGGTAGGCTACGGACAAAAATATCCTCAGAAGATACATCATCGTGGTTCAACATTGCCATCAATTGATGTGAACCCAAAACATATGGGATGTCGTGATGGAGACAAATATTTTCAATCATCAACACCCAATATAAATGTACTAACAGGTGCAATTGTTGGAGGACCAGCAGAAGATGATTCTTTTCAAGACTCACGATATAATGTTCCTCAATCAGAGCCAACTACATATATCAATGCTccttttgttggtgttttggcTTACTTCAAATAG 1506 0.3499 MTGKIVEISKLSLLLIMIMATMAKSVSLNYSDALTKSILFFEGQRSGKLPPSQRIKWRKDSGLNDGQDIHINMVGGYYDAGDNVKFHFPMAFTTTMLAWSVIEFGDHMGSDLQHALEAIRWGTDYFLKATKIPNIVVAQVGNPISDHDCWERPEDMDTSRQSYYLTQKKPGSEVSAEIAAALAASSIVFRKIDDRYSNMLLARAKQVFDFANNHRGSYNDSIGAGVCPFYCDFNGYMDELIWGAAWLYKASNDQNYWNFVKSNIQSIESSIVVRNIKGFKVLANGGSFSEFGWDSKHAGINVLVSQWVMNNPSNQSPFVPNANNLICSLLPNSPTKSVTYSKGGLLFKVGSSNLQHATSLSFLLIVYARYMQANNKVVQCGNVIAKPSDLTNLAKSQVDYILGNNPLGMSYMVGYGQKYPQKIHHRGSTLPSIDVNPKHMGCRDGDKYFQSSTPNINVLTGAIVGGPAEDDSFQDSRYNVPQSEPTTYINAPFVGVLAYFK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00920 501 PANTHER ENDOGLUCANASE 11 501 - -
Tsu06g00920 501 PANTHER ENDO-1,4-BETA-GLUCANASE 11 501 - -
Tsu06g00920 501 SUPERFAMILY Six-hairpin glycosidases 29 500 IPR008928 GO:0005975
Tsu06g00920 501 Pfam Glycosyl hydrolase family 9 30 497 IPR001701 GO:0004553|GO:0005975
Tsu06g00920 501 Gene3D - 25 501 IPR012341 GO:0005975
Tsu06g00920 501 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 400 426 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00920 Tsu-Chr6 8261288 8272383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00920 13 500 Glycoside Hydrolase AT1G70710 57.055 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00920 K01179 - gmx:100814370 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00920 06 8261288 8272383 Tsu06g00920 06 8261288 8272383 ECH