Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00867 ATGGCCGAAATTGACAACTCAAACCCTACTCCACCACCACCGCCACCTCTCACACCACCACATGAACAAACCGATTCATCCACCACAACTACCATACCAGAACCAGAACCAAAGCCAGAATTCCCGGTCACCGACCAAGACAACACACCCTTGCAACAAACCGAAGCAGAAACCGATACAAAAGGTAACTCATCACAAGATGTAGTCGCAATTGAACCCTCACCCGAACCACAACCAGAACCACAACCCGAACCCGAACAACGAAATCTCGAACAACAGAAGAAAATTCCACAGAGTCTAATCTCATTCAAAGAAGAAAGCAACAGAGTAAGCGATCTCTCCGATTCCGAAAGAACTTCCCTCCAACAATTCAAAAAACTCTTAACCGAAACCCTAACAGATCAACAAGTTTCAATCTACGGCGTTCCTCTTCTCGTCGACGAACGAACCGATACAATACTCCTCAAATTCCTCCGAGCAAGAGAATTCAAAGTCAAAGAATCACTCACAATGATCAACAATACTCTCCAATGGAGGAAAGATTTCAATATTGATGCACTTTTGGATGAAGATCTTGGTGATGATTTAGATAAAGTTGTTTTCATGCATGGTTTTTCTAGGGAAGGACATTCTGTTTGTTATAATGTTTATGGTGAGTTTCAGAATAAGGAACTTTATGATAAGACATTTGGTAGTGAAGAAAGGAGGAATAGGTTTTTGCGTTGGAGGATTCAGTTTTTGGAAAAGAGTATTAGGAAACTTGATTTTAATCCTGGTGGTGTTAATACTGTTTTTCAAGTTAATGATCTTAAAAATTCTCCTGGTCCTGCTAAAAAGGAACTTAGGGTTGCTACTAAACAGGCTTTGCAGTTGCTTCAGGATAATTATCCTGAATTTGTTGCTAAACAGGTTTTTATCAATGTGCCGTGGTGGTATCTTGCATTCTATACCATGATCAATCCATTCCTAACTCAGAGGACAAAGAGTAAATTTGTGTTTGCAGGCCCAAACAAGTCTCCCGATACACTTTTCAAGTATATTTCTCCTGAGCAAGTGCCGGTTCAGTACGGTGGCCTGAGTGTTGATTTTTGTGATTGCAACCCAGATTTCAGCATTTCTGACCCCACCACAGAAATTCCTGTAAAGCCGACCACAAAGCAAACTGTGGAAATTGCTATTTATGAGAAATGTGTTATTGTCTGGGAGTTGCGTGTTGTAGGCTGGGAGGTTAGTTATAGTGCTGAATTCAAACCCGATGCTAAGGATGCATATGCTGTCATTATACAGAAGGCTACAAAGATGTCCCCAACTGATGAACCAGTGGTTTCCAATAGCTTTAAAGTTAGTGAACTCGGAAAATTGTTCCTCACTGTTGACAATCCCACCTTGAAAAAGAAGAGGCTTCTTTACAGGTTCAAGATCAAACCCTACTCAGAATGA 1440 0.4097 MAEIDNSNPTPPPPPPLTPPHEQTDSSTTTTIPEPEPKPEFPVTDQDNTPLQQTEAETDTKGNSSQDVVAIEPSPEPQPEPQPEPEQRNLEQQKKIPQSLISFKEESNRVSDLSDSERTSLQQFKKLLTETLTDQQVSIYGVPLLVDERTDTILLKFLRAREFKVKESLTMINNTLQWRKDFNIDALLDEDLGDDLDKVVFMHGFSREGHSVCYNVYGEFQNKELYDKTFGSEERRNRFLRWRIQFLEKSIRKLDFNPGGVNTVFQVNDLKNSPGPAKKELRVATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFVFAGPNKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFSISDPTTEIPVKPTTKQTVEIAIYEKCVIVWELRVVGWEVSYSAEFKPDAKDAYAVIIQKATKMSPTDEPVVSNSFKVSELGKLFLTVDNPTLKKKRLLYRFKIKPYSE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00867 479 PANTHER PATELLIN-1 38 135 IPR044834 GO:0008289
Tsu06g00867 479 PANTHER PATELLIN-3 38 135 - -
Tsu06g00867 479 PANTHER PATELLIN-3 132 478 - -
Tsu06g00867 479 SMART CRAL_TRIO_N_2 150 175 IPR011074 -
Tsu06g00867 479 SMART sec14_4 194 361 IPR001251 -
Tsu06g00867 479 Pfam CRAL/TRIO domain 199 358 IPR001251 -
Tsu06g00867 479 Gene3D GOLD domain 370 475 - -
Tsu06g00867 479 Gene3D - 66 369 IPR036865 -
Tsu06g00867 479 PANTHER PATELLIN-1 132 478 IPR044834 GO:0008289
Tsu06g00867 479 SUPERFAMILY CRAL/TRIO domain 199 367 IPR036865 -
Tsu06g00867 479 Pfam CRAL/TRIO, N-terminal domain 121 174 IPR011074 -
Tsu06g00867 479 SUPERFAMILY CRAL/TRIO N-terminal domain 106 191 IPR036273 -
Tsu06g00867 479 CDD SEC14 198 359 IPR001251 -
Tsu06g00867 479 MobiDBLite consensus disorder prediction 7 21 - -
Tsu06g00867 479 MobiDBLite consensus disorder prediction 45 71 - -
Tsu06g00867 479 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 189 358 IPR001251 -
Tsu06g00867 479 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00867 Tsu-Chr6 7763728 7766605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00867 154 353 Acyl Lipid Metabolism Gene Families AT1G55840 28.704 6.76e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00867 - - gmx:100804006 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00867 06 7763728 7766605 Tsu06g00867 06 7763728 7766605 ECH