Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00866 ATGGCTGAAGAACCTCAAAAACCAACTGAACAAGTCGCTGCTACAACACCAGCAGCCACTTCTGAAACTCCGCCACCACCACAGGTTGAAGAAGTTGTAGCCGCCGCCGAGGTTGCCGCCACAACTGAAAAGGACGCTGTTGTTGCTCCTCCTGCTTCTGAAGAGGCCGAGAAACCGGCTGAGGATCTTAAACCTGCTGATGAGACTGTTGTTGAAGCCGCTGCCGATGCCGCCGCCGTAACCGATAAGAAGATTTTGCAATCGGTTTCTTTTAAGGAAGAAACTAACGTGGTTTCTGAATTACCTGAACCTCAGAAAAAAGCACTTGATGAACTTAAACAGGTTATTCAAGAAGCGCTTAATAAACATGAGTTTACTGCTCCTCCACCACCGCCACCAACTAAAGCAGCCGAAGAGAAAAAacctgaagaagaaaagaaaaccgAAGAAGTCGCAGTAGAAGAGAAGAAGGAAGAAGTAGCAGTtgaagagaaaaaggaagaagcGGTAACCGAAGAGAAAaaggttgaagaagttgaaaagaaagaagaggaaCCTAAAACTGAAGTCGTAACTGAACCTGAAGCGAAGAAAGAGGAGACAGTTTTGGAGGTTGTTGAGAAAATAGCTACAAGTACTGAAGAAGACGGAGCAAAAACGGTTGAAGCTATTCAAGAAAGTATAGTACCCGTTACCGCTACTGACGGTGAACAACCTGTTGTTGAAGCAGTTACGGAAGCTGTTGTTGCTGAGGTGGAAGTTATTCCTACTACACCAGAAGAAGTTGAAATATGGGGAATTCCGTTACTAGCTGATGAAAGAAGTGATGTGATTCTTTTGAAATTTCTGAGAGCTAGGGATTTTAAGGTCAAAGAAGCTTTCACAATGATCAAACAAACCGTGCTTTGGCGAAAGGAATTCGGAATTGAAGCACTTCTTCAAGAAGATCTAGGAACTGATTGGGACAAAGTTGTTTTCACCAATGGTTATGACAAAGAAGGTCACCCTGTTTATTACAATGTTTTTGGTGAGTTTGAGGACAAGGAATTGTATCAAAAAACATTCTCCGATGACGAGAAGAGAAACAAGTTTATTCGTTGGAGGATTCAGTCTTTGGAGAAAAGTGTTAGAAAACTTGACTTCACTCCATCTGGTATCTCTACTATTGTTCAAGTTAATGATCTTAACAATTCTCCTGGACTTGGTAAGAAGGAGCTTAGACAAGCTACTAACAAGGCTCTTCAATTGCTTCAAGACAATTATCCTGAATTTGTTGCCAAACAGGTTTTTATCAATGTTCCTTGGTGGTACCTTGCCTTTTCTAGGATGATAAGTGCTTTCCTGACTCAAAGGACTAAGAGCAAATTTGTATTTGCTGGCCCCTCAAAATCTGCTGATACTCTTTTCAAATATATTGCTCCTGAGCAAGTCCCAGTTCAATATGGAGGACTGAGCCGAGAGGGTGAACAGGAATTCACCACTGCTGACCCTGCTACTGAGGTTACTATCAAACCAGCAACAAAACATGACGTTGAGTTCCCTATTTCTGAGAAAAGCACTTTGGTTTGGGAAGTAAGAGTTGTGGATTGGAATGTGAGCTATGGAGCTGAATTTGTGCCAAGTGCTGAAGACGGATACACTGTGATTATCCAGAAGAACAGGAAAATAGCTCCAGCTGATGAAACAATAATTAGCAACACCTTCAAAATTGGTGAACCTGGTGGTAAGGTTATACTCACCATAGATAACCAATCATCTAAGAAAAAGAAGCTCCTTTACAGGTCCAAGACCATACCAATCTCCGAGTAA 1809 0.4041 MAEEPQKPTEQVAATTPAATSETPPPPQVEEVVAAAEVAATTEKDAVVAPPASEEAEKPAEDLKPADETVVEAAADAAAVTDKKILQSVSFKEETNVVSELPEPQKKALDELKQVIQEALNKHEFTAPPPPPPTKAAEEKKPEEEKKTEEVAVEEKKEEVAVEEKKEEAVTEEKKVEEVEKKEEEPKTEVVTEPEAKKEETVLEVVEKIATSTEEDGAKTVEAIQESIVPVTATDGEQPVVEAVTEAVVAEVEVIPTTPEEVEIWGIPLLADERSDVILLKFLRARDFKVKEAFTMIKQTVLWRKEFGIEALLQEDLGTDWDKVVFTNGYDKEGHPVYYNVFGEFEDKELYQKTFSDDEKRNKFIRWRIQSLEKSVRKLDFTPSGISTIVQVNDLNNSPGLGKKELRQATNKALQLLQDNYPEFVAKQVFINVPWWYLAFSRMISAFLTQRTKSKFVFAGPSKSADTLFKYIAPEQVPVQYGGLSREGEQEFTTADPATEVTIKPATKHDVEFPISEKSTLVWEVRVVDWNVSYGAEFVPSAEDGYTVIIQKNRKIAPADETIISNTFKIGEPGGKVILTIDNQSSKKKKLLYRSKTIPISE 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00866 602 SUPERFAMILY CRAL/TRIO N-terminal domain 84 316 IPR036273 -
Tsu06g00866 602 PANTHER PATELLIN-1 1 602 IPR044834 GO:0008289
Tsu06g00866 602 MobiDBLite consensus disorder prediction 43 64 - -
Tsu06g00866 602 MobiDBLite consensus disorder prediction 136 155 - -
Tsu06g00866 602 SMART CRAL_TRIO_N_2 275 300 IPR011074 -
Tsu06g00866 602 MobiDBLite consensus disorder prediction 1 28 - -
Tsu06g00866 602 PANTHER PATELLIN-LIKE PROTEIN 1 602 - -
Tsu06g00866 602 Coils Coil 146 182 - -
Tsu06g00866 602 Gene3D - 249 306 - -
Tsu06g00866 602 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 314 489 IPR001251 -
Tsu06g00866 602 MobiDBLite consensus disorder prediction 120 155 - -
Tsu06g00866 602 Gene3D GOLD domain 502 598 - -
Tsu06g00866 602 Pfam CRAL/TRIO domain 323 483 IPR001251 -
Tsu06g00866 602 SMART sec14_4 318 486 IPR001251 -
Tsu06g00866 602 MobiDBLite consensus disorder prediction 177 198 - -
Tsu06g00866 602 Gene3D - 323 501 IPR036865 -
Tsu06g00866 602 SUPERFAMILY CRAL/TRIO domain 325 485 IPR036865 -
Tsu06g00866 602 CDD SEC14 320 484 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00866 Tsu-Chr6 7754508 7758434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00866 279 478 Acyl Lipid Metabolism Gene Families AT1G55840 29.954 1.09e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00866 - K19996 gmx:100794623 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00866 06 7754508 7758434 Tsu06g00866 06 7754508 7758434 ECH