Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00855 atggaGGACATTGAAGATTTGATGATCGGAACCGGAGCCGGAACTCCACCGGGATTTCGTTCTCCGTTAACGTCCGTTACCGTTGGCTTTGGAACGAAGAAGATTCAACGCTCTTCTCTATTACCTTCACCTTCTCCTTCAATCCCTGGCACTCAGaCTATTTTCATAAAGACATTTGGATGTTCTCATAATCAGAGTGATAGTGAATATATGGCTGGTCAGCTTTCAGCTTTTGGTTACTCATTGAGTGATAATCCTGATGAAGCAGATCTATGGCTCATAAACACTTGCACAGTAAAATCCCCGAGTCAATCTGCCATGGACACCATCATAACAAAAGGAAAATCTTCAAATAAACCATTAGTTGTTGCTGGCTGTGTCCCCCAAGGAAGCCGCGATACAAAAGAGCTGGAAGGGATCAGCATTGTAGGAGTCCAGCAAATTGACCgtgttgttgaagttgtagaGGAGACTTTGAAAGGTCACGAAGTGCGGCTTTTGACCCGTAAGACATTACCAGCACTTGACCTTCCAAAGGTGAGAAAGAACAAATTTGTTGAGATTCTTCCAATTAATGTTGGATGTTTAGGTGCTTGCACTTATTGCAAGACAAAACATGCTCGGGGTCACCTTGGAAGTTACACAATAGAGAGCCTTGTTGGGCGTGTAAAATCTGTGGTATCTGATGGAGTTAAAGAAATATGGCTGAGTAGTGAAGATACCGGAGCATATGGTCGCGACATTGGTGTCAATCTTCCAACTTTATTGAAGGCCTTAGTAGCAGAACTACCAGATGATGGAAGCACTATGCTGCGTATTGGAATGACCAATCCACCTTTTATCCTTGAGCACTTGAAAGAGATAGCAGAGGTTCTACGGCATCCATGTGTTTACACCTTTTTGCATGTGCCAGTTCAGTCAGGAAGTGATGCTATTTTGACTGCAATGAATCGAGAATATACTGTGAGTGAGTTTAGGACTGTTGTAGATACCTTAACTGAGCTTGTATCAGGGATGCAGATTGCCACTGATATAATATGTGGATTTCCAGGTGAAACCGATGAAGATTTTGAGCAAACTGTCAACCTTATAAGAGAATACAAATTCTCTCAAGTTCATATTTCACAATTTTATCCTCGACCAGGCACACCTGCGGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTGAAGAGAAGAAGCCGTGAGCTGACGAATGTTTTTGAAGCCTTCACGCCATACACCGGGATGGAAGGCAAAGTGGAAAGAATTTGGATTACTGATATTGCATCTGATGGAGTGCACTTGGTTGGTCATACAAAAGGATATATACAAGTTCTTGTAATTGCTCCAGACAATATGCTTGGAAGTTCAGCTCTGGCCAAGATAACATCTGTCGGAAGATGGTCAGTTTTTGGGGAAATAATTGAGACACTCAATCATGCAAGTGACAATAAAGCTTTGAACAAGCAGGTTCCTAATCAGGATATGTCTTCTCTCTGTTGTGACCAAACCAACACTTGTGCAACCTCAGAAGTGCCAGAATCTTGTGCTTGTGGAAATGTTGACAGCTGCTGTAGTCAGAGTACTCTCGAGACGACCGATAATTCAAGAGACACTATAATGCTGCCACAGAATCAAAACAGCAAAAATTTGTTTGGGTGGATACTAAGGAAGCGAAAGAATCTACACAAAAGGGTTGAAAGTGAATTTGCCTCAGGATCTGATATAAAGCAAGAAAAGAACATGAAAAAGTGGGACTTTGTTGATAAGGCTCTTTTGGGTGGAATCTCTATCAGCATCTTGGCAATTATTGCTTTATTAGTTTATCTTAGGTTTAGTGTTATTTGGTCCTAA 1854 0.4115 MEDIEDLMIGTGAGTPPGFRSPLTSVTVGFGTKKIQRSSLLPSPSPSIPGTQTIFIKTFGCSHNQSDSEYMAGQLSAFGYSLSDNPDEADLWLINTCTVKSPSQSAMDTIITKGKSSNKPLVVAGCVPQGSRDTKELEGISIVGVQQIDRVVEVVEETLKGHEVRLLTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIESLVGRVKSVVSDGVKEIWLSSEDTGAYGRDIGVNLPTLLKALVAELPDDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYTFLHVPVQSGSDAILTAMNREYTVSEFRTVVDTLTELVSGMQIATDIICGFPGETDEDFEQTVNLIREYKFSQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFEAFTPYTGMEGKVERIWITDIASDGVHLVGHTKGYIQVLVIAPDNMLGSSALAKITSVGRWSVFGEIIETLNHASDNKALNKQVPNQDMSSLCCDQTNTCATSEVPESCACGNVDSCCSQSTLETTDNSRDTIMLPQNQNSKNLFGWILRKRKNLHKRVESEFASGSDIKQEKNMKKWDFVDKALLGGISISILAIIALLVYLRFSVIWS 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00855 617 CDD Radical_SAM 189 393 - -
Tsu06g00855 617 Gene3D tm_1862 like domain 183 413 IPR023404 -
Tsu06g00855 617 SUPERFAMILY Radical SAM enzymes 175 409 - -
Tsu06g00855 617 Pfam Uncharacterized protein family UPF0004 54 133 IPR013848 GO:0035596|GO:0051539
Tsu06g00855 617 SMART MiaB 185 409 IPR006638 GO:0003824|GO:0051536
Tsu06g00855 617 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 53 470 IPR005839 GO:0006400|GO:0016740|GO:0051539
Tsu06g00855 617 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 52 160 IPR013848 GO:0035596|GO:0051539
Tsu06g00855 617 ProSiteProfiles Radical SAM core domain profile. 181 413 IPR007197 GO:0003824|GO:0051536
Tsu06g00855 617 SFLD Radical SAM 151 399 IPR007197 GO:0003824|GO:0051536
Tsu06g00855 617 SFLD B12-binding domain containing 151 399 - -
Tsu06g00855 617 MobiDBLite consensus disorder prediction 1 21 - -
Tsu06g00855 617 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 54 475 IPR006466 GO:0035598|GO:0035600
Tsu06g00855 617 ProSiteProfiles TRAM domain profile. 414 476 IPR002792 -
Tsu06g00855 617 Pfam Radical SAM superfamily 192 364 IPR007197 GO:0003824|GO:0051536
Tsu06g00855 617 ProSitePatterns Methylthiotransferase radical SAM domain signature. 189 209 IPR020612 GO:0051539
Tsu06g00855 617 Gene3D - 53 172 IPR038135 -
Tsu06g00855 617 PANTHER RADICAL SAM PROTEINS 1 506 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00855 K15865 - gmx:100798865 995.342