Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00653 atgtcCCTATCAGATTCTGAAACCAACTATGGCAGTGGTGGATCCGAGTACAAGCCTTTCCGTCATATCAGCCGCGATAGATTATTATATGAAATGCTTGGATCAGCAAAGTCAGCGGATTCAAAAGCATGGAAGGTTCTCATAATGGACAAAGTTACGGTGAAAGTTATGTCTCATTCATGTAAAATGGCAGATATTACAGACCAAGAAGTTTCTTTGGTGGAAGACCTTTTCCGGAGAAGGCAACCATTACCATCACTGGATGCTGTTTACTTCATGCAGCCTTCGAAAGAGaaTGTGGTCATGTTCTTGTCTGATATGTCTGGAAGGGAGCCCCTATACAAGAAAGCCTATATATTTTTCTGCTCACCAATCCCAAAGGATCTTGTAAACCACATCAAGTGTGATACAAGTGTCTTACCTCGCATAGGTGCATTGAGAGAGGTCAGAATTTGTTTTAACCTTCTATTCAGTATTTATAAGCAAGGGTTTTCCACTGATCAAGAAACAGCCTTGCAAGAACTTTACGGCAATGTGGACAATATTCGTAGATTTAATACTTGCTTGAATATTATGGCAACTCGAATAGCTACAGTTTTTGCATCACTGAAGGAGTTACCGAATGTGTGGTATCGTTCAGCAAAGGAAAGTGAAGACGAATCTACTCCAACAGCAACTCGTGAATTAGTTCCTACCAAGCTTGCTGATGCAGTTTGGGACATGGTTTCTAAATATAAATCCACTATTCCAAAATTTCCACAGAGTGAAACATGTGACCTGATCATTATTGACAGAACCATTGATCAGATTGCTCCTGTCATTCATGAATGGACCTATGATGCTATGTGCCATGATTTGTTGGATATGGatggaaataaatatatacaagaGGTTCCCAGCAAAAGTGGTGGTCCACCTGAGAAAAAGGAGGTCATTCTAGAAGAACATGATTCAGTCTGGCTTGAACTTCGCCATGCACATATAGCAGATGCTAGTGAGAGATTGCATGAAAAGTTTACCACCTTTAAGTCAAAGAACAAAGCAGCACAAATCCACCAAAGTTCAAGAGATGGTAGTGAATTATCTACACGAGATTTGCAAAAAATGGTTCAAGCTTTGCCCCAATACACTGAGCAAATGGAAAAGATTTCACTCCATGTAGAGATAGCTGGAAAGATCAACACAATTATCAGAGAAGCAAATCTTCGAGGGCTGGGACAGTTGGAGCAGGATCTTGTTTTCGGGGATGCTCAAGCCAAGGACGTTATTACCTTTTTAAGAACAAATCAGAGTATGTCTCCTGAAGATAAGCTACGGTTGTTGATGATCTATGCAACAGTCTACCCTGAGAAGTTTGAGGGTGATAAAGGTTTAAAGCTAATGCAGTTGGCAAAACTATCACCCGATGACATGAAAGTTATCAGTAATATGCAAATGCTTGCGGGATCATCAAAAAAGAAGGCAGCTCCTACTAGTGGTGGTTTCTCACTGAAGTTCAATAACCAGAAGACAACACAAGCAGCACGCAAGGATCGTACTGATGAAGAGGAAGAACAATGGTCACTATTTCGATTTTATCCCGTTTTAGAGGAGCTCATTCAAAATCTTAATAAGGGTGTATTGCCAAAGACTGACTATGCATGTAAAAATGAACCGATTCCTGCTCCCCAAGGAAACTCTACTCGGTCCAGTAAAAGCAATCAGACAGCTCCACCTCCGACCACCGCTCCTAATTCAATAAGATCTAGGCGGACAGCTAACTGGGCTAAGAGAGGTACTTCTGACGACGGATATTCAAGTGATTCCACGTTAAAGAACGTAACTTCTGATTTCAAGAAGATGGGAAAGCGAATCTTTGTGTTTATTATTGGCGGGGCTACTCGATCTGAGCTACGTGTTTGTCACAAACTGacaacaaaactaaaaagggaAATAATCCTAGGCACTACTTCCATGGATGATCCTCCACAATATCTTACGAAATTGAAGTTATTATGCGACAGTCATATTGCACTCGACGGCCTTGGAATATGA 2034 0.4027 MSLSDSETNYGSGGSEYKPFRHISRDRLLYEMLGSAKSADSKAWKVLIMDKVTVKVMSHSCKMADITDQEVSLVEDLFRRRQPLPSLDAVYFMQPSKENVVMFLSDMSGREPLYKKAYIFFCSPIPKDLVNHIKCDTSVLPRIGALREVRICFNLLFSIYKQGFSTDQETALQELYGNVDNIRRFNTCLNIMATRIATVFASLKELPNVWYRSAKESEDESTPTATRELVPTKLADAVWDMVSKYKSTIPKFPQSETCDLIIIDRTIDQIAPVIHEWTYDAMCHDLLDMDGNKYIQEVPSKSGGPPEKKEVILEEHDSVWLELRHAHIADASERLHEKFTTFKSKNKAAQIHQSSRDGSELSTRDLQKMVQALPQYTEQMEKISLHVEIAGKINTIIREANLRGLGQLEQDLVFGDAQAKDVITFLRTNQSMSPEDKLRLLMIYATVYPEKFEGDKGLKLMQLAKLSPDDMKVISNMQMLAGSSKKKAAPTSGGFSLKFNNQKTTQAARKDRTDEEEEQWSLFRFYPVLEELIQNLNKGVLPKTDYACKNEPIPAPQGNSTRSSKSNQTAPPPTTAPNSIRSRRTANWAKRGTSDDGYSSDSTLKNVTSDFKKMGKRIFVFIIGGATRSELRVCHKLTTKLKREIILGTTSMDDPPQYLTKLKLLCDSHIALDGLGI 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00653 677 Gene3D - 163 548 IPR027482 -
Tsu06g00653 677 Gene3D - 400 526 - -
Tsu06g00653 677 PIRSF VPS45_Sec1 15 671 IPR001619 GO:0016192
Tsu06g00653 677 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 276 399 IPR043127 -
Tsu06g00653 677 MobiDBLite consensus disorder prediction 549 602 - -
Tsu06g00653 677 Pfam Sec1 family 45 659 IPR001619 GO:0016192
Tsu06g00653 677 MobiDBLite consensus disorder prediction 485 514 - -
Tsu06g00653 677 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 21 665 IPR001619 GO:0016192
Tsu06g00653 677 MobiDBLite consensus disorder prediction 554 602 - -
Tsu06g00653 677 Gene3D - 563 668 IPR027482 -
Tsu06g00653 677 SUPERFAMILY Sec1/munc18-like (SM) proteins 24 664 IPR036045 -
Tsu06g00653 677 Gene3D - 14 148 IPR043154 -
Tsu06g00653 677 PANTHER PROTEIN TRANSPORT SEC1A 21 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00653 Tsu-Chr6 5689104 5698019 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00653 K15292 - gmx:100783301 1075.85