Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00517 ATGGAGGACACAATCCCTCTCTTTCTAACATGTTTCATCACACTCCTCCTCACAACATTCCCAACCCACACACGTGCCACCCTCCCAGGCACGTGGGAGCTTCTAATCCCAAATGCAGGCATAGCTTCAATGCACACAGCAGTAACACGCTTCAACAACGTAATACTCTTAGACCGAACCAACATCGGTCCATCACGTAAACTCCTCCCAAAAAACCATTGCCGGTTCGACCAAAACGACGCcgttttaaaaaaagattgttACGCTCACTCGATTCTCTTCGACCCCAAAAAAAACCAACTCCGTCCTTTAAAAATCCTCACTGACACGTGGTGCTCTTCCGGTTCATTTCTCCCTAACGGAACACTTTTACAAACCGGCGGTGACTTAGACGGGTTCAAAAAGATCCGAAAATTTAACCCGTGTGATTCAAACGGGTCATGCGATTGGGAAGAGTTAAACGACGTCGAATTAAGCGAAGGTCGTTGGTATGGAACGAATCAAATTCTTCCAGATGGTTCTGTTATCATCGTCGGCGGAAGAGGTTCAAATTCTGTTGAATTTTATCCTAAACGCGAAAGCGGTGCCGtttcatttccttttctttctgaAACTGAAGATACACAAATGGATAATCTATACCCTTACGTTCATCTTCTTCCTAACGGTAAACTCTTCGTATTCGCAAATACGAAATCGGTTATGTACGATTTTGATAAGAACATTGTGGTGAAGGTTTATCCGGAGTTGATCGGTGGTCCGAGAAACTATCCGTCGGCTGGGAGTTCGGTTATGTTAGCTTTGGAAGGTGAATTTTCTGAGGCGGTGGTTGTTGTTTGCGGCGGTGCTCAATATGGTGCGTTTCTTGAACGGAATGTTGATACGCCGGCGCATGGGAGTTGTGGTAGGATAATGGCGACGGGATCCGACCCGGTTTGGGAAATGGAGGATATGCCGTTTCAGAGAATTATGGGTGATATGGTAATTTTACCAAACGGTGAAGTTTTGATTATAAATGGAGCTATGAAAGGAACACAAGGTTTTGAATTGGGTTCAGATCCGTGTTTGAATCCAGTTTTATATCGACCCGATGAACCAGCTGGGTTacggttcatggttttgaatcCGGGTACTATACCGAGACTTTATCATTCAACCGCGAATTTGTTACCGGATGGAAGGGTTTTATTAGCGGGAAGTAATCCACACGTTTTCTATCGTTTCGACGTTGAGTTTCCAACGGAGTTAAGAATCGAAGCGTTTTCGCCCGAGTACTTGGATCCAGATAAGATGAATATCCGACCCGAGATTTTGGAAGTGCCCGAAACGGTGTCGTATGGTGTGGgttttgatgttgttgtgagTGTTGAGTTACCTGTTGTGGGAATTATTGAAGTGAATTTGGGTAGTGCACCTTTTGCTACTCATTCCTTTTCTCAAGGTCAACGGTTGGTCAAACTTGGGGTTGGTTCGGCTGTTCCGGAGGATGGTGGGAGATGGAGGATTAGATGTACGGCACCGCCAAGTGGGATGGTTGCGCCACCCGGGTATTACATGGTTTTTGCGGTTAATCAAGCTGTTCCAAGTGTGGCACGTTGGATACATGTGTCATAG 1614 0.438 MEDTIPLFLTCFITLLLTTFPTHTRATLPGTWELLIPNAGIASMHTAVTRFNNVILLDRTNIGPSRKLLPKNHCRFDQNDAVLKKDCYAHSILFDPKKNQLRPLKILTDTWCSSGSFLPNGTLLQTGGDLDGFKKIRKFNPCDSNGSCDWEELNDVELSEGRWYGTNQILPDGSVIIVGGRGSNSVEFYPKRESGAVSFPFLSETEDTQMDNLYPYVHLLPNGKLFVFANTKSVMYDFDKNIVVKVYPELIGGPRNYPSAGSSVMLALEGEFSEAVVVVCGGAQYGAFLERNVDTPAHGSCGRIMATGSDPVWEMEDMPFQRIMGDMVILPNGEVLIINGAMKGTQGFELGSDPCLNPVLYRPDEPAGLRFMVLNPGTIPRLYHSTANLLPDGRVLLAGSNPHVFYRFDVEFPTELRIEAFSPEYLDPDKMNIRPEILEVPETVSYGVGFDVVVSVELPVVGIIEVNLGSAPFATHSFSQGQRLVKLGVGSAVPEDGGRWRIRCTAPPSGMVAPPGYYMVFAVNQAVPSVARWIHVS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00517 537 Gene3D - 27 432 IPR037293 -
Tsu06g00517 537 PANTHER SECRETED PROTEIN-RELATED 14 536 - -
Tsu06g00517 537 SUPERFAMILY Galactose oxidase, central domain 76 427 IPR011043 -
Tsu06g00517 537 CDD E_set_GO_C 432 536 IPR015202 -
Tsu06g00517 537 Pfam Galactose oxidase-like, Early set domain 434 536 IPR015202 -
Tsu06g00517 537 SUPERFAMILY E set domains 432 536 IPR014756 -
Tsu06g00517 537 PANTHER - 14 536 - -
Tsu06g00517 537 Pfam Glyoxal oxidase N-terminus 44 282 IPR009880 -
Tsu06g00517 537 Gene3D Immunoglobulins 433 537 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00517 Tsu-Chr6 4336843 4338548 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00517 - - ahf:112748634 890.952