Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00511 ATGACACGTTTTATGTATTCTCTAGCATGGCCTTTTGTTCTTCTATTAGCTTCTTCATTAGCTTCTGCTGCTATCGTGGAACACACTTGGAATGTTGAGGACATCGATTTTCAGCTATTGTGCCGTCCACAGGTGATTACTGCCGTCAATGGAACTTTGCCAGGACCAACAATTAATGCTCGAGAGGGTGACACTGTTATCATTCATGTATTCAACAAATCACCCTACAACCTTACTATTCATTGGCATGGAATCATTCAATTTTTAACACCTTGGTCTGATGGTCCAGAGTATGTAACTCAATGCCCAATTCCATCTAATGGCAGTTATACATACCAATTTAATTTAACAGGACAAGAAGGAACACTTTGGTGGCATGCACACTCTTCTTTCCTACGTGCTACTGTTTATGGTGCCCTTATTATTAAGCCACGACTAGGACACTCATACCCCTATCCTAAAGTTTATCAAGAAGTCCCCTTAGTGGTTGGGGAGTGGTGGAATGCTaatgttgaagaagttgagagaAATGCAACTGATACTGGTAACCCACCATTGGAATCAATTGCATCCACAATCAATGGCTTCCCTGGTGATTTGTTTAATTGCTCTCAAGATAAAACTTACATGCTCAAAGTGAAGCGGGGAAAAACCTACTTACTTCGTGTTATCAATGCTGCACTCAATGAACAACATTTCTTTAAAGTAGCGAATCATAGTTTAACAGTTGTAGCTATGGATGCTATCTACACAGAACATTATAACACCGATGTTATTGTGTTAGCACCTGGCCAAACTGTAGACGTTCTCTTAAGAACCAACCAAGCTGTTGGTTCTTATTATATGGTTTTCACACCGTATCGTTCGTCGAGTGTCGGAACCAATAATGTTACCACTAGAGGAGTTATTGTTTATGATGGTGCTAATTCCACAACAAAAACACCTGTAATGCCAATTTTACCTGATGAACACGATACATCAATAGCTCACAAATTTTACACCAACGTTACAGGGTTGACAACTGGCAGACATTGGGTTCAAGTACCACGTAAAATTGATGAACATATGTTCATAACCTTTGGAATTGGTTTAGAACAATGCATAAATCCAGGACCAGGACGTTGTGTTGTACTTAACTCAAGACTTTCAGCAAACATGAACAATGAATCATTTGCTCTTCCTAAGGGAAAACGTTTCTCATTATTAGAAGCATTTTATCGTAATGCTAGTAATGGTATATACACAAAAGATTTTCCAAATAATCCACCATTTGAATTTAACTATACTGACCCTTCCTTAAGGTTCCTTAATGCTACTCAACCTTTTGCATTCGCGCCTAAGTCAACAAAAATCAAGACTCTGAAGTTTAATTCGACGGTTCAGATTGTACTTCAGAATAATGCTATTTTAGGCGCGGAGAATCATCCTATTCATATTCATGGTTATAATTTTCATGTTTTGGCTCAAGGTTTTGGGAATTATAATTCTACTACAGATGAAcgaaagtttaatttttttaatcctcAAATGCGTAACACTATTGCTGTACCTGTTGGTGGATGGGCTGTTATTAGATTTCAAGCAAATAATCCAGGTATTTGGTTTATGCATTGTCATTTGGAAACACATTTGCCATGGGGATTAGGAATGGCTTTTGAGGTTGAGAATGGGCCTACTCCAGAGACCACAATTCCTCCTCCACCGGCTAATTATCCTAAGTGTTGA 1725 0.3768 MTRFMYSLAWPFVLLLASSLASAAIVEHTWNVEDIDFQLLCRPQVITAVNGTLPGPTINAREGDTVIIHVFNKSPYNLTIHWHGIIQFLTPWSDGPEYVTQCPIPSNGSYTYQFNLTGQEGTLWWHAHSSFLRATVYGALIIKPRLGHSYPYPKVYQEVPLVVGEWWNANVEEVERNATDTGNPPLESIASTINGFPGDLFNCSQDKTYMLKVKRGKTYLLRVINAALNEQHFFKVANHSLTVVAMDAIYTEHYNTDVIVLAPGQTVDVLLRTNQAVGSYYMVFTPYRSSSVGTNNVTTRGVIVYDGANSTTKTPVMPILPDEHDTSIAHKFYTNVTGLTTGRHWVQVPRKIDEHMFITFGIGLEQCINPGPGRCVVLNSRLSANMNNESFALPKGKRFSLLEAFYRNASNGIYTKDFPNNPPFEFNYTDPSLRFLNATQPFAFAPKSTKIKTLKFNSTVQIVLQNNAILGAENHPIHIHGYNFHVLAQGFGNYNSTTDERKFNFFNPQMRNTIAVPVGGWAVIRFQANNPGIWFMHCHLETHLPWGLGMAFEVENGPTPETTIPPPPANYPKC 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00511 574 PANTHER LACCASE-7 8 574 - -
Tsu06g00511 574 SUPERFAMILY Cupredoxins 348 574 IPR008972 -
Tsu06g00511 574 CDD CuRO_1_LCC_plant 28 144 IPR034288 GO:0005507
Tsu06g00511 574 ProSitePatterns Multicopper oxidases signature 1. 532 552 IPR033138 -
Tsu06g00511 574 Pfam Multicopper oxidase 421 556 IPR011706 GO:0005507|GO:0016491
Tsu06g00511 574 Gene3D - 156 341 IPR008972 -
Tsu06g00511 574 SUPERFAMILY Cupredoxins 22 169 IPR008972 -
Tsu06g00511 574 TIGRFAM laccase: laccase 24 574 IPR017761 GO:0046274|GO:0048046|GO:0052716
Tsu06g00511 574 CDD CuRO_2_LCC_plant 159 305 IPR034285 -
Tsu06g00511 574 Pfam Multicopper oxidase 32 145 IPR011707 GO:0005507
Tsu06g00511 574 PANTHER MULTI-COPPER OXIDASE 8 574 IPR045087 -
Tsu06g00511 574 ProSitePatterns Multicopper oxidases signature 2. 537 548 IPR002355 GO:0005507
Tsu06g00511 574 SUPERFAMILY Cupredoxins 153 339 IPR008972 -
Tsu06g00511 574 Gene3D - 375 574 IPR008972 -
Tsu06g00511 574 Pfam Multicopper oxidase 158 308 IPR001117 -
Tsu06g00511 574 Gene3D - 17 144 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00511 Tsu-Chr6 4275052 4280245 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00511 K05909 - gmx:100812336 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00511 06 4275052 4280245 Tsu06g00511 06 4275052 4280245 ECH