Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00495 ATGAAAGGGGTGCTTACGCTTCAGCTATGGAATCCACCACCACGCTTCCACACTCTCTCCTTCTCCAACCACCCTCTCTCAATCTCAGCCTCTTTAACCACCACCGCCACCTCCTCCACCCAACAACCACCGCAGGACTTCCTCACAGCAAAAGAAAGAAGACGCTTAAGAAACGAACGTAGAGAGAGCAAGAACACAACCAATTGGAAAGAAGAAGTTGAAGATAAACTCATTATGAAAACAAAGAAAGTGAGAAAACATTGGATGGATGAACTCAATCTTGATAATCTCATTAATTTGGGTCCTCAATGGTGGGGTGTTCGTGTTGCCCGTAGTAAGGGTCAGTATACTGCTGAAGCACTTGCTCGTTCTTTGGCTAAATTCTTCCCTGATATGGAGTTTAagGTATATGCTCCGGCTATCtatgagaaaaagaaattgaaggATGGTTCCATCTCTGTAAAACCAAAGCCTCTATTTCCGGGTAATATTTTTCTGAGATGTGTACTGAACAAACCATTACATGACTTCATAAAAGAGTATGATGGGGTTCATGGCTTTACTGGAGCCACGGTTGGAAATACAAAGAAGCAAATTAATAAACCAAAGCCAATAGATGAGGTTGATATGGAAGCAATATTCAGAGAGGCAAAAGTGGAGCAAGAAAATGCTGATAAAGCATTTGAGGAAGAACAGAAAAATGCTGCCGTAATCTCTTTGAATCCGAAATCAAAGTTAGACTCAGATGTTTCAAAAGCTATTGTTGATTCTAAGCCTAAAAGGGGCTCTAGAAAAACCTCTAACCAACTCACCGTCACAGAAGAAGCTTCACCTGCTAAAAAAGGTCCTAAACTTGCCACTGGTTCCACTGTTAGAATTATATCCGGAACATTTTTAGGATTTGCAGGCACACTCAAGAAGCTGAGCCGCAAAACCAAAATGGCCACGGTGCATTTAACTATATTCGGGAAAGAGAACATAGTAGACCTAGATATTAGCGAAATTGTTCCTGAGACTAACTAA 1023 0.4057 MKGVLTLQLWNPPPRFHTLSFSNHPLSISASLTTTATSSTQQPPQDFLTAKERRRLRNERRESKNTTNWKEEVEDKLIMKTKKVRKHWMDELNLDNLINLGPQWWGVRVARSKGQYTAEALARSLAKFFPDMEFKVYAPAIYEKKKLKDGSISVKPKPLFPGNIFLRCVLNKPLHDFIKEYDGVHGFTGATVGNTKKQINKPKPIDEVDMEAIFREAKVEQENADKAFEEEQKNAAVISLNPKSKLDSDVSKAIVDSKPKRGSRKTSNQLTVTEEASPAKKGPKLATGSTVRIISGTFLGFAGTLKKLSRKTKMATVHLTIFGKENIVDLDISEIVPETN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00495 340 SUPERFAMILY Translation proteins SH3-like domain 285 335 IPR008991 -
Tsu06g00495 340 Gene3D - 102 220 IPR036735 GO:0006355
Tsu06g00495 340 SMART nusgn_4 101 217 IPR006645 GO:0140673
Tsu06g00495 340 MobiDBLite consensus disorder prediction 256 286 - -
Tsu06g00495 340 Pfam Transcription termination factor nusG 103 213 IPR006645 GO:0140673
Tsu06g00495 340 SUPERFAMILY N-utilization substance G protein NusG, N-terminal domain 102 215 IPR036735 GO:0006355
Tsu06g00495 340 Gene3D - 286 336 IPR014722 -
Tsu06g00495 340 CDD NGN_plant 103 214 - -
Tsu06g00495 340 CDD KOW_NusG 284 335 - -
Tsu06g00495 340 PANTHER TRANSCRIPTION ANTITERMINATION PROTEIN RFAH 27 337 - -
Tsu06g00495 340 PANTHER RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG 27 337 IPR043425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00495 Tsu-Chr6 4177529 4181171 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00495 - - lja:Lj0g3v0333779.1 429.098