Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00408 ATGACagacacaaaacacaaaaccgTCGTCACGTGGCGCAACATTCCCAACCTCTCCACCTCCCACGACGTCGTTTCATCCAATCACCTCTTCAACGACGCCGTTTTCACTTTCACCGACGCAAACACCATTCGAACCAAATTCGCCACCATCTCCACATCGCAAACTAAACCGAACAACGAATTCACTCCGACGCCAGCTCAACTTCTAAATCACCCGCTCGCTGTTGTCGCAATTGTTCCCAAAGATGCTGCATTGTTTCTCGCCGGAGCTGTTGCCGGAGCTGCTGCTAAAACCGTTACTGCTCCACTCGATCGAATCAAGCTTCTCATGCAGACTCATGGAGTGCGAATTGGACAAGAAAGTGCTAAGAAGACAATTGGTTTTATCGAGGCAATAACTATGATAGGGAAGGAAGAAGGTATTAGAGGTTACTGGAAGGGTAACCTACCGCAGGTTATTAGGGTTATACCTTATAGTGCCGTCCAGCTCTTTGCTTATGAACTTTATAAGAAAGTATTCAAGGGAAAAGACAATGAGCTATCTGTTGTGGGAAGACTTGCAGCAGGTGCTTTTGCAGGCATGACATCAACTTTTATAACATACCCTTTAGATGTACTGAGATTAAGATTAGCTGTTGAACCTGGGTGCCGAACAATGACAGAGGTCGCCTTGAGCATGGTAAAAGAGGAAGGTTTTGCATCTTTCTACTATGGCCTTGGACCTTCTCTTATTGGAATAGCTCCATATATTGCAGTTAACTTTTGTGTTTTTGACTTACTAAAGAAGTCGTTGCCAGAGAAATATCAGAAGAGAACTGAAACATCTCTAGTCACCGCCGTGCTTTCCGCATCTCTTGCCACACTTACATGCTATCCTCTGGATACAGTACGAAGACAGATGCAACTGAAGGGTACCCCTTATAAGACAGTATTAGACGCGATTTCAGGTATTGTGGCACAGGATGGAGTTGTTGGGTTGTACCGGGGATTCGTGCCCAATGCTTTAAAAAACCTACCAAACAGCAGCATCAGGCTTACTACATATGACATTGTCAAACGCCTTATTGCAGCTAGTGAGAAAGAGTTTCAAACAATTGCCGAGGAAAACCGCAACAAACTAAAGAAACACCCATAG 1137 0.4398 MTDTKHKTVVTWRNIPNLSTSHDVVSSNHLFNDAVFTFTDANTIRTKFATISTSQTKPNNEFTPTPAQLLNHPLAVVAIVPKDAALFLAGAVAGAAAKTVTAPLDRIKLLMQTHGVRIGQESAKKTIGFIEAITMIGKEEGIRGYWKGNLPQVIRVIPYSAVQLFAYELYKKVFKGKDNELSVVGRLAAGAFAGMTSTFITYPLDVLRLRLAVEPGCRTMTEVALSMVKEEGFASFYYGLGPSLIGIAPYIAVNFCVFDLLKKSLPEKYQKRTETSLVTAVLSASLATLTCYPLDTVRRQMQLKGTPYKTVLDAISGIVAQDGVVGLYRGFVPNALKNLPNSSIRLTTYDIVKRLIAASEKEFQTIAEENRNKLKKHP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00408 378 Pfam Mitochondrial carrier protein 86 176 IPR018108 -
Tsu06g00408 378 Pfam Mitochondrial carrier protein 180 267 IPR018108 -
Tsu06g00408 378 Pfam Mitochondrial carrier protein 275 357 IPR018108 -
Tsu06g00408 378 PRINTS Mitochondrial carrier protein signature 99 113 IPR002067 GO:0055085
Tsu06g00408 378 PRINTS Mitochondrial carrier protein signature 196 214 IPR002067 GO:0055085
Tsu06g00408 378 PRINTS Mitochondrial carrier protein signature 237 255 IPR002067 GO:0055085
Tsu06g00408 378 PRINTS Mitochondrial carrier protein signature 86 99 IPR002067 GO:0055085
Tsu06g00408 378 PRINTS Mitochondrial carrier protein signature 148 168 IPR002067 GO:0055085
Tsu06g00408 378 PRINTS Mitochondrial carrier protein signature 280 302 IPR002067 GO:0055085
Tsu06g00408 378 ProSiteProfiles Solute carrier (Solcar) repeat profile. 271 355 IPR018108 -
Tsu06g00408 378 ProSiteProfiles Solute carrier (Solcar) repeat profile. 181 264 IPR018108 -
Tsu06g00408 378 ProSiteProfiles Solute carrier (Solcar) repeat profile. 81 173 IPR018108 -
Tsu06g00408 378 SUPERFAMILY Mitochondrial carrier 84 351 IPR023395 -
Tsu06g00408 378 Gene3D Mitochondrial carrier domain 83 356 IPR023395 -
Tsu06g00408 378 PANTHER ADP/ATP CARRIER PROTEIN 7 368 - -
Tsu06g00408 378 PANTHER SOLUTE CARRIER FAMILY 25 7 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00408 Tsu-Chr6 3487496 3491561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00408 5 373 Organic Solute Cotransporters AT3G51870 67.546 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00408 K14684 - gmx:100796878 578.941